PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G0780

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 505aa MW: 55040.5 Da PI: 8.7926

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G0780	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.5e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Gh_A06G0780 70 FMCEICNKGFQRDQNLQLHRRGH 92 89*******************88 PP
2	zf-C2H2	13.1	0.00029	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Gh_A06G0780 147 WKCEKCSKTYAVQSDWKAHSKIC 169 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.31E-7	69	92	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.1E-5	69	92	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.99	70	92	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.4E-5	70	92	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.031	70	92	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	240	112	142	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.4E-4	135	168	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.31E-7	142	167	No hit	No description
SMART	SM00355	110	147	167	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MDESMSNLTS TSGEFSASLG TVLYPPQQSF ASTNQAPAAA KKKRNLPGNP DPDAEVIALS 60 PKTLLATNRF MCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTNKEVVRKK VYVCPETTCV 120 HHDPARALGD LTGIKKHFCR KHGEKKWKCE KCSKTYAVQS DWKAHSKICG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAE ESARAITGPA QQVPGGSSVS HMNNLQSQLH SHDFYGLSVK 240 REEHPFNARP TTEDSLNPPW PGPPPINLLD HPLSQNENPS QNTGSNTLLP PFQTQTASPH 300 MSATALLQKA AQMGVTMSQP LQSSPVAAMA SMQRAYMSGG TSGSTSFASS TAGSGLGLFP 360 REDLGSGSPH GLASLGNKAA TAITSGFMEQ SPAATPNSLL HDMMCSLSSG FDGSSSFEQS 420 FNRVWNTKGN PIDFQEPTTD HLSKTKESHS QSNNMGGNDG MTRDFLGLKA FPHRDFPNLA 480 ALNHRLNPSS TFGQQNQHSQ TPWQG

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MDESMSNLTS TSGEFSASLG TVLYPPQQSF ASTNQAPAAA KKKRNLPGNP DPDAEVIALS  60
PKTLLATNRF MCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTNKEVVRKK VYVCPETTCV  120
HHDPARALGD LTGIKKHFCR KHGEKKWKCE KCSKTYAVQS DWKAHSKICG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAE ESARAITGPA QQVPGGSSVS HMNNLQSQLH SHDFYGLSVK  240
REEHPFNARP TTEDSLNPPW PGPPPINLLD HPLSQNENPS QNTGSNTLLP PFQTQTASPH  300
MSATALLQKA AQMGVTMSQP LQSSPVAAMA SMQRAYMSGG TSGSTSFASS TAGSGLGLFP  360
REDLGSGSPH GLASLGNKAA TAITSGFMEQ SPAATPNSLL HDMMCSLSSG FDGSSSFEQS  420
FNRVWNTKGN PIDFQEPTTD HLSKTKESHS QSNNMGGNDG MTRDFLGLKA FPHRDFPNLA  480
ALNHRLNPSS TFGQQNQHSQ TPWQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	143	204	3	64	Zinc finger protein JACKDAW
5b3h_F	1e-34	143	204	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	109	KLKQRTNKEVVRKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.10509	0.0	boll\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016754901.1	0.0	PREDICTED: protein indeterminate-domain 12-like
Swissprot	Q8H1F5	1e-115	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A1U8PUT9	0.0	A0A1U8PUT9_GOSHI; protein indeterminate-domain 12-like
STRING	Gorai.010G099600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-117	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]