PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G1158
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 254aa    MW: 28864.2 Da    PI: 6.7959
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G1158genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like52.51.1e-16741072255
      G2-like  22 GGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   G++ AtPk +l+lm+vkgL+++hvkSHLQ+YR+
  Gh_A06G1158  74 VGEKGATPKLVLQLMNVKGLSIAHVKSHLQMYRS 107
                  59999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.43E-573108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-1474108IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-1075109IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVEKHDEEKR VDNEQAENIS AMSFPSQKCS SLDLNEEASS KEDYDYNIIG NGKQGDEIEK  60
TSEGNSSNNN NNIVGEKGAT PKLVLQLMNV KGLSIAHVKS HLQMYRSKKL DEAGQALCER  120
NRVIKGREEL QSSPHLHFRM ENGGFVLATE SPLYQPPLDF EVSFPRHQVS NDDGHHTNQI  180
HGVDARLGPM RTGRLLEDKR WHPLERQKQR DCLPDLQLRL SRRSGIDAET TTHCEARRKL  240
APTFHFLNLN IYPG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.194757e-35boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5964072e-31JX596407.1 Gossypium hirsutum clone NBRI_GE32984 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016754151.11e-176PREDICTED: uncharacterized protein LOC107962325
TrEMBLA0A1U8PSN81e-175A0A1U8PSN8_GOSHI; uncharacterized protein LOC107962325
STRINGGorai.010G159700.11e-153(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-16G2-like family protein