PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G1310

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 293aa MW: 33029.9 Da PI: 9.5794

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G1310	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.3	1.7e-33	71	124	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+ave+LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR+ Gh_A06G1310 71 PRLRWTPDLHQCFVHAVERLGGEDRATPKMVLQIMDVKGLTISHVKSHLQMYRS 124 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.315	67	127	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-32	67	125	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.56E-15	69	125	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.7E-25	71	125	IPR006447	Myb domain, plants
Pfam	PF00249	6.9E-8	72	123	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MKRVDVGSCW LKGCCSSSSS LDDSGGISVY SPSPSMMRVM RRCHHKDDNL QLPEISLKSP 60 IVRPYVRSKM PRLRWTPDLH QCFVHAVERL GGEDRATPKM VLQIMDVKGL TISHVKSHLQ 120 MYRSTKHEQM IQEAATASRR NEKVLELMNC PQNQQFKDQV RPYNLGLGIE GMPSCTIYRQ 180 PQWNGNKVSN QLSYGELTNK GSEQRSSTSY IIFKDLLKSC TIPENREKVN VGQHGGADWK 240 CNHQKLVKLG DHSQASDCSI CRSLKSKVSQ KMSRHGKAET LGLNDVSLEL SLA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-20	72	127	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-20	72	127	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-20	72	127	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-20	72	127	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-20	72	127	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-20	72	127	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-20	72	127	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-20	72	127	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-20	72	127	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-20	72	127	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-20	72	127	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-20	72	127	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578495	1e-115	JX578495.1 Gossypium hirsutum clone NBRI_GE10535 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017646457.1	0.0	PREDICTED: uncharacterized protein LOC108486757
Refseq	XP_017646458.1	0.0	PREDICTED: uncharacterized protein LOC108486757
Refseq	XP_017646459.1	0.0	PREDICTED: uncharacterized protein LOC108486757
TrEMBL	A0A1U8PWB5	0.0	A0A1U8PWB5_GOSHI; uncharacterized protein LOC107963440
STRING	Gorai.010G181100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	2e-33	G2-like family protein