PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G1439
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-X1
Protein Properties Length: 879aa    MW: 98127.6 Da    PI: 8.4348
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G1439genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.12.5e-05193211120
     zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                  CG H C  lCH+GpCp+Cp+
  Gh_A06G1439 193 CG-HFCLLLCHPGPCPSCPK 211
                  **.***************96 PP
2zf-NF-X116.71.6e-05245263119
     zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                  C kH C+++CH+G CppC+
  Gh_A06G1439 245 CNKHNCSEICHPGTCPPCR 263
                  779***************8 PP
3zf-NF-X1186.1e-06405424120
     zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                  CG+H C++ C+ G+CppC++
  Gh_A06G1439 405 CGRHACKRRCCDGDCPPCSE 424
                  ******************85 PP
4zf-NF-X116.12.5e-05434450319
     zf-NF-X1   3 kHkCqklCHeGpCppCp 19 
                  +HkC ++CH+G C pCp
  Gh_A06G1439 434 NHKCPAPCHRGACAPCP 450
                  7***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.94E-575152No hitNo description
PROSITE patternPS01359080146IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.11E-5181229No hitNo description
SMARTSM004380.0049193211IPR000967Zinc finger, NF-X1-type
PfamPF014220.0029193210IPR000967Zinc finger, NF-X1-type
CDDcd060086.58E-8235283No hitNo description
SMARTSM004380.0022245264IPR000967Zinc finger, NF-X1-type
PfamPF014220.0061245263IPR000967Zinc finger, NF-X1-type
CDDcd060084.67E-8288328No hitNo description
SMARTSM004380.0027298317IPR000967Zinc finger, NF-X1-type
PfamPF014220.5298316IPR000967Zinc finger, NF-X1-type
CDDcd060081.46E-8342391No hitNo description
SMARTSM004381.8352372IPR000967Zinc finger, NF-X1-type
PfamPF014220.009352371IPR000967Zinc finger, NF-X1-type
CDDcd060083.16E-8395443No hitNo description
SMARTSM004380.0092405424IPR000967Zinc finger, NF-X1-type
PfamPF014228.5E-4405423IPR000967Zinc finger, NF-X1-type
CDDcd060081.41E-10422470No hitNo description
SMARTSM004380.012432451IPR000967Zinc finger, NF-X1-type
PfamPF014220.011432450IPR000967Zinc finger, NF-X1-type
SMARTSM0043824489510IPR000967Zinc finger, NF-X1-type
PfamPF014226.7499509IPR000967Zinc finger, NF-X1-type
PfamPF0142240518527IPR000967Zinc finger, NF-X1-type
SMARTSM0043812600630IPR000967Zinc finger, NF-X1-type
PfamPF014220.13600611IPR000967Zinc finger, NF-X1-type
SMARTSM004380.017643661IPR000967Zinc finger, NF-X1-type
PfamPF014220.24643660IPR000967Zinc finger, NF-X1-type
SMARTSM0043812706727IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MNTTANYHPP PSSQPPFSDS DLDSDSDSEN FQVGSDLSNS IFKTYLEFSS SSSSSSSITA  60
VDLSKIQSFL TSSSSGALSC LICLERIRPS DPTWSCSSLC FAVFHLLCIQ SWARQSSDLS  120
AARAAARLPI TAETAAKQAT WNCPKCRSSY SKSEIPRCYL CFCGKLRDPP SDNPWILPHS  180
CGEICNRPLP NNCGHFCLLL CHPGPCPSCP KSVKARCFCG SVEDFRRCGF KNFSCNKLCK  240
KRLDCNKHNC SEICHPGTCP PCRARETYRC RCGKKEEEKD CCDRDYRCEN ECKKLLNCGK  300
HVCKRGCHGG DCGECPLQGN RTCPCGKRIY EGLPCDGVAP VCGATCNKLL NCGFHRCPER  360
CHKGSCVETC RTMVKKACRC GGLKKEVPCY QDLSCERKCL RMRDCGRHAC KRRCCDGDCP  420
PCSEVCDKRL RCKNHKCPAP CHRGACAPCP IMVTISCACG ETHFEVPCGT EMDHKPPKCR  480
KLCKIAPLCR HASTSKPHRC HYGACPPCRA PCEEEYPCGH KCNLRCHGPR PPPNPEFTLK  540
PKKKKSNHQT ECTPGTPCPP CPELVWRPCV GEHFGAERMM VCSNTTRFSC DNLCGNLLPC  600
GNHYCTKTCH PLETQPSSSG HQKRSESCEV CNLPCQKVRM PKCSHPCSLP CHPGECLPCK  660
VLVKRSCHCG AMVHAFECIH YNNLSEKDQV AARSCGGPCH RKLPNCTHLC PEICHVDKCP  720
APDKCSKKVT VRCKCQTLKK EWICQDVQAA YRDTGNDPKD IPKNQFGLGL LPCNSDCKSK  780
VQEVESALQL RKPKVLEKKE PENEKHGPKR RKRRDRIQEG KQVSRFQEFV ASVKRLLLFI  840
IIGAALIAVT YYSYKGLLQL SDWMNEVELQ RARRRRSRF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1807813PKRRKRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6161041e-161JX616104.1 Gossypium hirsutum clone NBRI_GE60511 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643156.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0D2RAU30.0A0A0D2RAU3_GOSRA; Uncharacterized protein
STRINGGorai.010G197800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors