PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G1580

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 354aa MW: 38204.5 Da PI: 5.4587

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G1580	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.1	1.4e-11	168	226	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l + v l++e+ Gh_A06G1580 168 KRAKRIMANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDVTGLTTEN 226 9******************************************9999988888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.1E-17	164	228	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.783	166	229	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.5E-10	168	226	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.85E-11	168	220	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.9E-11	168	223	No hit	No description
CDD	cd14703	1.48E-24	169	220	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MQYPPLLNPN PLPPIPSKPN ASSTTQTALF FPNSTPFCGS HHRRAHSEVQ FRIPDELDLG 60 SDTFEGLGSE DDVFYNYVDI EKLGGSSKGP DEGGVSGSGI SGSSSGGSGQ NQKGEEINGG 120 SGKGEKNDGK GRHRYSNSVD GCSTMELIEA KKAMPPDKLA ELWNIDPKRA KRIMANRQSA 180 ARSKERKARY ITELERKVQT LQTEATTLSA QLTLFQRDVT GLTTENTELK LRLQAMDQQA 240 RLCDALNEAL KKEVEGLKIA TGEATTPTNT FPPQPQHMQI DTQNVQMPPF QPLQSNTLTT 300 NLSMVGATNS YAFADMMQQD PLGQLQGLDI SSGGSHSVKS EGPSISTSES SGTL

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MQYPPLLNPN PLPPIPSKPN ASSTTQTALF FPNSTPFCGS HHRRAHSEVQ FRIPDELDLG  60
SDTFEGLGSE DDVFYNYVDI EKLGGSSKGP DEGGVSGSGI SGSSSGGSGQ NQKGEEINGG  120
SGKGEKNDGK GRHRYSNSVD GCSTMELIEA KKAMPPDKLA ELWNIDPKRA KRIMANRQSA  180
ARSKERKARY ITELERKVQT LQTEATTLSA QLTLFQRDVT GLTTENTELK LRLQAMDQQA  240
RLCDALNEAL KKEVEGLKIA TGEATTPTNT FPPQPQHMQI DTQNVQMPPF QPLQSNTLTT  300
NLSMVGATNS YAFADMMQQD PLGQLQGLDI SSGGSHSVKS EGPSISTSES SGTL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269\|PubMed:27896439}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016726106.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	O22873	1e-100	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A1U8MGY0	0.0	A0A1U8MGY0_GOSHI; transcription factor RF2b-like
STRING	Gorai.010G218700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-91	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]