PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G1719

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 342aa MW: 36883.4 Da PI: 8.2619

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G1719	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107	1e-33	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Gh_A06G1719 47 KQRLRWTHELHDRFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 101 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.014	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-32	46	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.16E-17	46	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.8E-26	47	102	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-9	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	3.3E-17	133	187	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MYHPKTVPGS SLVRSNSLVH GQHLDCGASS MDPVSGGNSS NPNLASKQRL RWTHELHDRF 60 VDAVAQLGGP DRATPKGVLR VMGVQGLTIY HVKSHLQKYR LAKYLPDSSS DGKKPDKKET 120 GDMLSNLDGS SGMQITEALK LQMEVQKRLH EQLEAYFTSD IQQVQRQLQL RIEAQGKYLK 180 KIIEEQRLGG VLAEAPGTGA SVPALGDNGL ESEKKTDPAT PAPTSESPLQ DKAAKEGTSA 240 KSHSVDESFS SHHEPLTPDS GCHVGSPAGS PKGEMLKKKQ RVSMAGAFAK PEMVLPHQIL 300 DSSINASYQQ SQPVFMGEQF NPSSGISIRN ENQSGKGSGT EL

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MYHPKTVPGS SLVRSNSLVH GQHLDCGASS MDPVSGGNSS NPNLASKQRL RWTHELHDRF  60
VDAVAQLGGP DRATPKGVLR VMGVQGLTIY HVKSHLQKYR LAKYLPDSSS DGKKPDKKET  120
GDMLSNLDGS SGMQITEALK LQMEVQKRLH EQLEAYFTSD IQQVQRQLQL RIEAQGKYLK  180
KIIEEQRLGG VLAEAPGTGA SVPALGDNGL ESEKKTDPAT PAPTSESPLQ DKAAKEGTSA  240
KSHSVDESFS SHHEPLTPDS GCHVGSPAGS PKGEMLKKKQ RVSMAGAFAK PEMVLPHQIL  300
DSSINASYQQ SQPVFMGEQF NPSSGISIRN ENQSGKGSGT EL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-22	47	104	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-22	47	104	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-22	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-22	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-22	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-22	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-22	47	104	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-22	47	104	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-22	47	104	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-22	47	104	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-22	47	104	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-22	47	104	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.8840	0.0	boll\| ovule

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012450884.1	0.0	PREDICTED: myb family transcription factor APL
Refseq	XP_012450885.1	0.0	PREDICTED: myb family transcription factor APL
Refseq	XP_016751889.1	0.0	PREDICTED: myb family transcription factor APL-like
Refseq	XP_016751890.1	0.0	PREDICTED: myb family transcription factor APL-like
Swissprot	Q9SJW0	1e-125	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2P5WFR7	0.0	A0A2P5WFR7_GOSBA; Uncharacterized protein
STRING	EOY29060	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8753	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-110	G2-like family protein