PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G1758

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 190aa MW: 21941.8 Da PI: 5.0039

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G1758	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	87.2	3.1e-27	5	128	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv...ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 ppG+rF+Ptd el+++yL kkv+g++l+ ++i+e++iy ePw+ ++++++ y F+k +k + +gk+ r++ g+Wk + + +++ + Gh_A06G1758 5 PPGYRFEPTDVELLQDYLWKKVNGEPLPY-NIISECEIYGNqdkEPWNVF--IETSTETFYVFTKLKK-KGKGKNIDRVAGCGTWKGQKT-DPIMY-E 96 9**************************.89*996444496..5565566677777655.578**********8865.67887.7 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + ++g +k +v+ + +++g+k +W+mhe++l Gh_A06G1758 97 KMKIGNRKLFVYEVKGSNEGVKGHWIMHEFSL 128 899******9999***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-31	2	147	IPR003441	NAC domain
PROSITE profile	PS51005	30.003	4	147	IPR003441	NAC domain
Pfam	PF02365	5.4E-18	5	128	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MTGIPPGYRF EPTDVELLQD YLWKKVNGEP LPYNIISECE IYGNQDKEPW NVFIETSTET 60 FYVFTKLKKK GKGKNIDRVA GCGTWKGQKT DPIMYEKMKI GNRKLFVYEV KGSNEGVKGH 120 WIMHEFSLVD EEDKQIGDYV VCSIRNKNAK DDTDEEEPPM KKMRFNSEDH NPPETTSSAC 180 PLQTLLSDWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-21	4	149	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-21	4	149	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-21	4	149	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-21	4	149	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	4e-21	4	149	20	170	NAC domain-containing protein 19
3swm_B	4e-21	4	149	20	170	NAC domain-containing protein 19
3swm_C	4e-21	4	149	20	170	NAC domain-containing protein 19
3swm_D	4e-21	4	149	20	170	NAC domain-containing protein 19
3swp_A	4e-21	4	149	20	170	NAC domain-containing protein 19
3swp_B	4e-21	4	149	20	170	NAC domain-containing protein 19
3swp_C	4e-21	4	149	20	170	NAC domain-containing protein 19
3swp_D	4e-21	4	149	20	170	NAC domain-containing protein 19
4dul_A	4e-21	4	149	17	167	NAC domain-containing protein 19
4dul_B	4e-21	4	149	17	167	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016752791.1	1e-140	PREDICTED: NAC domain-containing protein 41-like
TrEMBL	A0A1U8PNM9	1e-139	A0A1U8PNM9_GOSHI; NAC domain-containing protein 41-like
STRING	Gorai.010G251100.1	1e-120	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13343	7	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10490.1	3e-21	NAC domain containing protein 52