PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G1759
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 190aa    MW: 21941.8 Da    PI: 4.9981
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G1759genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.23.1e-2751282128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv...ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  ppG+rF+Ptd el+++yL kkv+g++l+  ++i+e++iy     ePw+    ++++++  y F+k +k + +gk+  r++  g+Wk + +  +++  +
  Gh_A06G1759   5 PPGYRFEPTDVELLQDYLWKKVNGEPLPY-NIISECEIYGNqdkEPWNVF--IETSTETFYVFTKLKK-KGKGKNIDRVAGCGTWKGQKT-DPIMY-E 96 
                  9****************************.89*****99644449****6..5565566677777655.578**************8865.67887.7 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  + ++g +k +v+  + +++g+k +W+mhe++l
  Gh_A06G1759  97 KMKIGNRKLFVYEVKGSNEGVKGHWIMHEFSL 128
                  899**********9999*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-312147IPR003441NAC domain
PROSITE profilePS5100530.0034147IPR003441NAC domain
PfamPF023655.4E-185128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MTGIPPGYRF EPTDVELLQD YLWKKVNGEP LPYNIISECE IYGNQDKEPW NVFIETSTET  60
FYVFTKLKKK GKGKNIDRVA GCGTWKGQKT DPIMYEKMKI GNRKLFVYEV KGSNEGVKGH  120
WIMHEFSLVD EEDKQIGDYV VCSIRNKNAK DDTDDEEPPM KKMRFNSEDH NPPEPTSSAS  180
PLQTLFSDWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-21414920170NAC domain-containing protein 19
3swm_B5e-21414920170NAC domain-containing protein 19
3swm_C5e-21414920170NAC domain-containing protein 19
3swm_D5e-21414920170NAC domain-containing protein 19
3swp_A5e-21414920170NAC domain-containing protein 19
3swp_B5e-21414920170NAC domain-containing protein 19
3swp_C5e-21414920170NAC domain-containing protein 19
3swp_D5e-21414920170NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016753118.11e-140PREDICTED: NAC domain-containing protein 41-like
TrEMBLA0A1U8PRZ71e-138A0A1U8PRZ7_GOSHI; NAC domain-containing protein 41-like
STRINGGorai.010G251100.11e-121(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13343727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.12e-21NAC domain containing protein 52