PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G1924
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 226aa    MW: 25315.6 Da    PI: 6.5076
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G1924genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.6e-1856105255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+Wv+eIr+p+    ++r++lg+f tae+Aa a+++a++ + g
  Gh_A06G1924  56 RYRGVRQRH-WGSWVSEIRHPVL---KTRIWLGTFETAEDAATAYDEAARLMCG 105
                  69******9.**********744...5**********************87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.86E-3355113No hitNo description
SMARTSM003802.0E-3856119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-3356113IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2056114IPR016177DNA-binding domain
PfamPF008472.9E-1056105IPR001471AP2/ERF domain
PROSITE profilePS5103220.58756113IPR001471AP2/ERF domain
PRINTSPR003671.2E-105768IPR001471AP2/ERF domain
PRINTSPR003671.2E-107995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSLFHLSLDS PTSLFLSFSY SSFVLFLSGL FTNTLLLEHS LKLFLVETTM GRPQQRYRGV  60
RQRHWGSWVS EIRHPVLKTR IWLGTFETAE DAATAYDEAA RLMCGAKART NFPFNPNDPT  120
SSSKLLSATL AAKLHKCHMA ALQLAKTNAA KESYSAQCHP LTPTHGIAGN NAQKGYRRQP  180
EIKWEAEENP VGSEQQFIPL EDDDIDQMIE ELLDYGSIEL CSSSST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1855117467ATERF1
3gcc_A2e-1855117467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016722599.11e-170PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW55e-73ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1U8MAL51e-168A0A1U8MAL5_GOSHI; ethylene-responsive transcription factor ERF003-like
STRINGGorai.010G222900.11e-165(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-53ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]