PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G2080
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 178aa    MW: 20301.8 Da    PI: 9.4183
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G2080genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-101460654
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
          HLH  6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54
                 + +Er+RR +++  +++L +l+P+    +s+  +s  + L +A++YIk L
  Gh_A06G2080 14 KFIERNRRIQMKALYSKLNSLVPHH---SSREaVSLPDQLDEATNYIKRL 60
                 669*********************7...55555***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.331860IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-11875IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-51064No hitNo description
Gene3DG3DSA:4.10.280.105.4E-111175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-41466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-71560IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MEINNPNPSK MDRKFIERNR RIQMKALYSK LNSLVPHHSS REAVSLPDQL DEATNYIKRL  60
KANLDRMKEM KDGLRGLEER GNTSRSYGSK SPQIQIQEIG SSLAIALNTG FNSQFIFNET  120
IRIVHEERVE VVNANFSVVD DDTVFHTIHL TTGEPSTAAR ISQRLNKFVH DADASNKY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016722150.11e-129PREDICTED: transcription factor bHLH36-like
SwissprotF4JIJ71e-38BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A1U8M5W31e-127A0A1U8M5W3_GOSHI; transcription factor bHLH36-like
STRINGGorai.010G154100.11e-123(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-35bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]