PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G2115
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 137aa    MW: 15734.5 Da    PI: 6.7795
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G2115genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.61.6e-10116137122
                  ---SS-EEEEEEE--TT-SS-E CS
         WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                  +dDgy+WrKYG+K+vk++++pr
  Gh_A06G2115 116 MDDGYRWRKYGKKKVKNNPNPR 137
                  69*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-11104137IPR003657WRKY domain
SuperFamilySSF1182905.23E-9108137IPR003657WRKY domain
PROSITE profilePS5081114.16111137IPR003657WRKY domain
PfamPF031061.7E-6117137IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MFNSIILTPP NNPENSTPIC TPTLEITSHT HHLHLDDHFL VDPEQYNCKE TTTFTSSHMK  60
TSAYGSCWEV PGCNSFAYQY MQPNYDDKGS ANTADINGDD LRLKIAFRTK SDIEIMDDGY  120
RWRKYGKKKV KNNPNPR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698040.0KF669804.1 Gossypium hirsutum WRKY transcription factor 113 (WRKY113) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645345.11e-100PREDICTED: probable WRKY transcription factor 50
TrEMBLA0A2P5XD193e-99A0A2P5XD19_GOSBA; Uncharacterized protein
STRINGGorai.010G131300.11e-57(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.19e-14WRKY DNA-binding protein 50