PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A07G0023

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 1393aa MW: 156680 Da PI: 6.7591

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A07G0023	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.4	2.4e-31	1185	1240	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Gh_A07G0023 1185 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 1240 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF11145	7.1E-167	51	917	IPR021319	Protein of unknown function DUF2921
PROSITE profile	PS51294	12.22	1182	1242	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-27	1183	1243	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.63E-15	1183	1243	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.1E-26	1185	1240	IPR006447	Myb domain, plants
Pfam	PF00249	3.2E-6	1187	1238	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1393 aa Download sequence Send to blast
MKVQLFVVLL LWIFVELPVL ITSFMPPYES DPTLPDSSVI IAYNRSTDIE KHCSSFLTLA 60 SELKPDVNRG SRLKNELSFY LGDWEQETDE APLIQFDDNG NLESSQPPTS LFKLAFFEVR 120 DVNSIQQLQN TVSLGGVLSV GISKDWSFSY GDIEPNMNPG SSVVKIVFEG VYMEVEDDGE 180 ERLMCLVGSS TSTLPCTDTC DNDVFWALQT GDVPTYNHRH IRFLQDDQVL LVLRYPKSFN 240 LTQRAIYREM TSLNEQGGQR YFSKVHISSQ LSGHSKYQFS SELVQSTTFD PPPYQDELME 300 DGVLMLTGRQ FCRVLHHEYR EICLSIAPNY RFSSSDKNQI HGKFSHFVLE KEMQATGILS 360 IDEVKLIFQH VKCEQDTNRT GSTKVTAVLR SVTKTSFQHL ERLRTGLSGS TLAVEGIWNS 420 SSGQLSMVGC QGTVDSGPEG CDYVISMYFP HSLSIKQISF LFGTISNVKK DTGLDNPLYF 480 NAMRGINTGD FTEYLSYNYS MIKLVNAFER RTIPYQVLSI AKQWLFKYPA LKDAEEPLAQ 540 LNQLTRKLAS DGSVVVPDDQ LIAGPKSRAL VQINVLSLGP LLMDRNLRNK TVITKDELTS 600 CRFWNVSMHL AFKTEEELKK TIYKDVSELS LEGVYDPSLG EMHLVGCRKA LVGSMGIERG 660 QDCLISVKIQ YTPLNLQLWK KPTAKITINS QRKVGDPLYF NLINIHVHLS YYLDYFEADT 720 QRAYFEAILG SLVLTMSIAI IWNQLLYMKV NADIVPYIST TMLAFQFLGY SLPLICNAKV 780 VLKSMVPKDY EWPPPANGML KFVQSFEQAL LLVMLLLIAR LVHMVVESRS KTMSDAPREK 840 RVMLTTMAMA IYAYGVLILI VAVDKQNGHV WQIWMDVMVY LVYVFQDFFL LPQIISNRLM 900 AMPVKCLREG YYLGLTTCAK FWLVQPELTE TSQCNRYGLK FTLSDTPYKS KNMASSSSSE 960 LTLDCKPHGH FAAPSKCYAD QQQIVVVNHT LKLEDYLSRL EEERLKIDAF KRELPLCMQL 1020 LTNALESSRQ QLQAYRANQG PKPVLEEFMP LKTSVSENID KSQTISDHKA NWMTTAQLWS 1080 QAGHYETKQQ SSSITTSSPK DTDIGLNVVS PKLGSSLDSK QRIGGAFLPF SKDRNSCSSA 1140 LPDLSLASSD TENGTSCQQR DDGTSNNRTD GQTTNGSNTN QPHRKARRCW SPDLHRRFVN 1200 ALQMLGGSQV ATPKQIRELM KVDGLTNDEV KSHLQKYRLH TRRPSPIPQA AGAPTPQLVV 1260 LGGIWVPPEY ATAAHSGGPA MYGAHHHHHP AVPHAPPHFC ASPVPQEFYT TAATPALPPP 1320 HHTFHHQLHN MYNARNSPEP DVREAGDRSE SIEDGKSESG SWKGESCGDQ RIGLAALREE 1380 GEESNRSEIT LKF

Sequence ? help Back to Top

Protein Sequence Length: 1393 aa Download sequence Send to blast

MKVQLFVVLL LWIFVELPVL ITSFMPPYES DPTLPDSSVI IAYNRSTDIE KHCSSFLTLA  60
SELKPDVNRG SRLKNELSFY LGDWEQETDE APLIQFDDNG NLESSQPPTS LFKLAFFEVR  120
DVNSIQQLQN TVSLGGVLSV GISKDWSFSY GDIEPNMNPG SSVVKIVFEG VYMEVEDDGE  180
ERLMCLVGSS TSTLPCTDTC DNDVFWALQT GDVPTYNHRH IRFLQDDQVL LVLRYPKSFN  240
LTQRAIYREM TSLNEQGGQR YFSKVHISSQ LSGHSKYQFS SELVQSTTFD PPPYQDELME  300
DGVLMLTGRQ FCRVLHHEYR EICLSIAPNY RFSSSDKNQI HGKFSHFVLE KEMQATGILS  360
IDEVKLIFQH VKCEQDTNRT GSTKVTAVLR SVTKTSFQHL ERLRTGLSGS TLAVEGIWNS  420
SSGQLSMVGC QGTVDSGPEG CDYVISMYFP HSLSIKQISF LFGTISNVKK DTGLDNPLYF  480
NAMRGINTGD FTEYLSYNYS MIKLVNAFER RTIPYQVLSI AKQWLFKYPA LKDAEEPLAQ  540
LNQLTRKLAS DGSVVVPDDQ LIAGPKSRAL VQINVLSLGP LLMDRNLRNK TVITKDELTS  600
CRFWNVSMHL AFKTEEELKK TIYKDVSELS LEGVYDPSLG EMHLVGCRKA LVGSMGIERG  660
QDCLISVKIQ YTPLNLQLWK KPTAKITINS QRKVGDPLYF NLINIHVHLS YYLDYFEADT  720
QRAYFEAILG SLVLTMSIAI IWNQLLYMKV NADIVPYIST TMLAFQFLGY SLPLICNAKV  780
VLKSMVPKDY EWPPPANGML KFVQSFEQAL LLVMLLLIAR LVHMVVESRS KTMSDAPREK  840
RVMLTTMAMA IYAYGVLILI VAVDKQNGHV WQIWMDVMVY LVYVFQDFFL LPQIISNRLM  900
AMPVKCLREG YYLGLTTCAK FWLVQPELTE TSQCNRYGLK FTLSDTPYKS KNMASSSSSE  960
LTLDCKPHGH FAAPSKCYAD QQQIVVVNHT LKLEDYLSRL EEERLKIDAF KRELPLCMQL  1020
LTNALESSRQ QLQAYRANQG PKPVLEEFMP LKTSVSENID KSQTISDHKA NWMTTAQLWS  1080
QAGHYETKQQ SSSITTSSPK DTDIGLNVVS PKLGSSLDSK QRIGGAFLPF SKDRNSCSSA  1140
LPDLSLASSD TENGTSCQQR DDGTSNNRTD GQTTNGSNTN QPHRKARRCW SPDLHRRFVN  1200
ALQMLGGSQV ATPKQIRELM KVDGLTNDEV KSHLQKYRLH TRRPSPIPQA AGAPTPQLVV  1260
LGGIWVPPEY ATAAHSGGPA MYGAHHHHHP AVPHAPPHFC ASPVPQEFYT TAATPALPPP  1320
HHTFHHQLHN MYNARNSPEP DVREAGDRSE SIEDGKSESG SWKGESCGDQ RIGLAALREE  1380
GEESNRSEIT LKF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-14	1185	1238	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-14	1185	1238	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-14	1185	1238	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-14	1185	1238	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-14	1185	1238	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-14	1185	1238	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-14	1185	1238	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-14	1185	1238	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9994	0.0	ovule

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX615064	0.0	JX615064.1 Gossypium hirsutum clone NBRI_GE58863 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016718015.1	0.0	PREDICTED: uncharacterized protein LOC107930808
TrEMBL	A0A1U8LTW4	0.0	A0A1U8LTW4_GOSHI; uncharacterized protein LOC107930808
STRING	Gorai.001G002900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-100	G2-like family protein