PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0088
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 253aa    MW: 28418.9 Da    PI: 7.7729
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0088genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed  l+++++++G+g +W t +r+ g++R++k+c++rw++yl
      Gh_A07G0088 14 KGPWSPDEDNTLINYIHKHGTGgNWITLPRKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding43.66.7e-1469111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +   lG++ W+ Ia+ ++ gRt++++k++w++
      Gh_A07G0088  69 GGFSEEEDNIICSLYSTLGSR-WSIIAAQLP-GRTDNDIKNHWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.501962IPR017930Myb domain
SuperFamilySSF466897.03E-2811109IPR009057Homeodomain-like
SMARTSM007174.7E-121364IPR001005SANT/Myb domain
PfamPF002498.0E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-231569IPR009057Homeodomain-like
CDDcd001672.84E-91662No hitNo description
PROSITE profilePS5129423.44663117IPR017930Myb domain
SMARTSM007171.2E-1267115IPR001005SANT/Myb domain
PfamPF002491.7E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2470117IPR009057Homeodomain-like
CDDcd001674.83E-971110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MVRAPCCDKS NVKKGPWSPD EDNTLINYIH KHGTGGNWIT LPRKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FSEEEDNIIC SLYSTLGSRW SIIAAQLPGR TDNDIKNHWN TKLKKKLLTA  120
KIKGGNNEIT TTMSAAPFCK AVGSNGSSST TSSSYMTDLK TYQQKYYEYP ALVLDQTDQF  180
PMPYLPFENN YGAAWCSNRV GNEGQGMMYH FVDFEVDPQN VLSGSSFQEE NINGVGDDPW  240
FGIVSATHYN IFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28141197110B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In roots, expressed in endodermal cells from the late elongation zones to the differentiation zone and, to a lower extent, in endodermal cells of the meristematic zone. {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
UniprotTISSUE SPECIFICITY: Expressed in leaves, roots (endodermis-specific) and seedlings. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322, ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5890441e-63JX589044.1 Gossypium hirsutum clone NBRI_GE23653 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648089.10.0PREDICTED: transcription factor MYB36-like
SwissprotQ9FKL21e-69MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A0D2PK371e-170A0A0D2PK37_GOSRA; Uncharacterized protein
STRINGGorai.001G010000.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2448134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-66myb domain protein 84
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]