PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0129
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 302aa    MW: 33805 Da    PI: 8.8557
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0129genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.76.1e-31165221158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  dep+YVN+KQy++Il+RR +Rakle + kl  ksrkpylheSRh hA++R RgsgGrF
  Gh_A07G0129 165 DEPIYVNPKQYHGILRRRRHRAKLETRIKL-VKSRKPYLHESRHLHAMNRIRGSGGRF 221
                  79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.4E-34163224IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.012164224IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.3E-27166221IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.7E-22167189IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.7E-22198221IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MASRVRILPK ENLLISCPPW CNSNEQQFVE IVPQNVSLKK AENRSQLYHN AKRFDLQLLD  60
HEPTLAEAGV TGVNNSQCNS SESGQVESCR KDIEGQTKPV YLLNNPNTLL SPSHPNYNHS  120
MACAQYPYTD AYFTGLFTPN GQQTIAQMTG TAPTRIPLPL DLAEDEPIYV NPKQYHGILR  180
RRRHRAKLET RIKLVKSRKP YLHESRHLHA MNRIRGSGGR FLSKKKPQWS DPTSNYILDI  240
GCFDQKDNNG SELESRCSHT AEYGGSCTSC SNISSITNNG GDISRRAVSS CNGIQNCASL  300
VR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-20165234274NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016716880.10.0PREDICTED: nuclear transcription factor Y subunit A-5-like
RefseqXP_016716881.10.0PREDICTED: nuclear transcription factor Y subunit A-5-like
RefseqXP_016716883.10.0PREDICTED: nuclear transcription factor Y subunit A-5-like
RefseqXP_016716884.10.0PREDICTED: nuclear transcription factor Y subunit A-5-like
RefseqXP_016716885.10.0PREDICTED: nuclear transcription factor Y subunit A-5-like
RefseqXP_016716886.10.0PREDICTED: nuclear transcription factor Y subunit A-5-like
RefseqXP_016716887.10.0PREDICTED: nuclear transcription factor Y subunit A-5-like
RefseqXP_016716889.10.0PREDICTED: nuclear transcription factor Y subunit A-5-like
TrEMBLA0A1U8LUJ20.0A0A1U8LUJ2_GOSHI; nuclear transcription factor Y subunit A-5-like
TrEMBLA0A2P5WVV50.0A0A2P5WVV5_GOSBA; Uncharacterized protein
STRINGGorai.001G014200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2438834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.24e-37nuclear factor Y, subunit A7