PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A07G0308

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

YABBY

Protein Properties

Length: 166aa MW: 18734.2 Da PI: 8.4042

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A07G0308	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	207.5	4.7e-64	8	158	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklse 103 +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ + +++++++ ++++ +t+ s+ s+ Gh_A07G0308 8 VPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV----------QAASYATQDYRTDLGSSSKCNTKFSMRAPSK 95 68******************************************99999999884..........3444445555555555555555566655567 PP YABBY 104 nedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 n +ee v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Gh_A07G0308 96 NATEERV----VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 158 7776655....8***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.3E-71	9	158	IPR006780	YABBY protein
SuperFamily	SSF47095	3.27E-8	101	151	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.1E-4	106	152	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MSTCTNVVPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 WQDVQAASYA TQDYRTDLGS SSKCNTKFSM RAPSKNATEE RVVNRPPEKR QRVPSAYNQF 120 IKEEIQRIKA NNPDISHREA FSTAAKNWAH FPHIHFGLML ENQKSN

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017604642.1	1e-123	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_017604702.1	1e-123	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_017604753.1	1e-123	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_017604802.1	1e-123	PREDICTED: axial regulator YABBY 5-like isoform X1
Swissprot	Q8GW46	9e-89	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1U8M1V2	1e-121	A0A1U8M1V2_GOSHI; axial regulator YABBY 5-like
STRING	Gorai.001G042700.1	1e-119	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	4e-91	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]