PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A07G0698

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 208aa MW: 23586.5 Da PI: 9.1247

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A07G0698	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.3	3.5e-18	10	57	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll+++++++G g W+ ++++ g++R++k+c++rw++yl Gh_A07G0698 10 KGAWTEEEDLLLKKCIEKYGEGKWHQVPARAGLNRCRKSCRLRWLNYL 57 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.468	5	61	IPR017930	Myb domain
SuperFamily	SSF46689	7.34E-23	7	97	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-23	7	59	IPR009057	Homeodomain-like
SMART	SM00717	4.2E-16	9	59	IPR001005	SANT/Myb domain
Pfam	PF00249	3.4E-17	10	57	IPR001005	SANT/Myb domain
CDD	cd00167	1.46E-12	12	57	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-13	60	106	IPR009057	Homeodomain-like
SMART	SM00717	0.0016	62	103	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	11.479	62	105	IPR017930	Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MEGSSLRVRK GAWTEEEDLL LKKCIEKYGE GKWHQVPARA GLNRCRKSCR LRWLNYLKPD 60 IKRGAFADDE VDLMIRLHNL LGNRLPGRTA NDVKNYWNTY LRKKMVKPSP KLNIEVIKPR 120 PLNLSVPLDK NNNNNNNDSD HAAASTPASN SLVSSDSGNN SSYAFSNDNN EIMWWKNMLM 180 NEDEPQGFGN NINHSASGDQ FINEALGV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-19	10	105	4	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	6e-19	10	105	58	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	6e-19	10	105	58	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	2e-19	10	105	4	105	C-Myb DNA-Binding Domain
1msf_C	2e-19	10	105	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.20945	2e-93	boll

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC491877	2e-95	KC491877.1 Gossypium arboreum transcription factor AN2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017647923.1	1e-134	PREDICTED: transcription factor MYB90-like
Swissprot	Q9FNV9	1e-52	MY113_ARATH; Transcription factor MYB113
TrEMBL	A0A1U8K0Z0	4e-78	A0A1U8K0Z0_GOSHI; PAP1D-T
STRING	Gorai.001G087200.1	2e-78	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	2e-53	myb domain protein 113

Publications ? help Back to Top
Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]