PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0776
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 586aa    MW: 64910.4 Da    PI: 6.6767
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0776genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like751.1e-23199250153
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 
                  k r++W+ eLH++Fv av+qL G ++AtPk+ilelm+v+ Lt ++v SHLQ +
  Gh_A07G0776 199 KSRVVWSAELHSKFVAAVNQL-GMKNATPKKILELMNVQKLTTQNVGSHLQAF 250
                  68*******************.9****************************87 PP
2Response_reg79.79.9e-27201261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdf 97 
                   vl vdD+p+ + ll+++l++ +y +v+++ ++  al+ll+++++Dl++ D+ mp+mdG++ll+     e++lp+i+++a+g+ + + + +  Ga d+
   Gh_A07G0776  20 VLAVDDDPTCLLLLETLLRRCKY-NVTTTNQAITALKLLRQNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDTNVVMKGITHGACDY 114
                   799********************.**************************************87754.558************************** PP

                   EESS--HHHHHH CS
  Response_reg  98 lsKpfdpeelvk 109
                   l Kp+ +eel +
   Gh_A07G0776 115 LLKPVRIEELNN 126
                   ********9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363929.4E-1381560IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.6E-4217154No hitNo description
SuperFamilySSF521722.85E-3718145IPR011006CheY-like superfamily
SMARTSM004481.1E-3018128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.2319132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-2420126IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.88E-2521124No hitNo description
PROSITE profilePS5129411.159196255IPR017930Myb domain
SuperFamilySSF466899.68E-15197252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-22198250IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-20199250IPR006447Myb domain, plants
PfamPF002496.3E-6201248IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MRVERIINDT NDEFPIGIRV LAVDDDPTCL LLLETLLRRC KYNVTTTNQA ITALKLLRQN  60
KFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSANGDT NVVMKGITHG ACDYLLKPVR  120
IEELNNIWQH VVRRKRFERK DRYNSDRQDK LRADSGEAVG MGSIGNNGKL KKKRKDQDED  180
EERDENGHHN NEDPSFRKKS RVVWSAELHS KFVAAVNQLG MKNATPKKIL ELMNVQKLTT  240
QNVGSHLQAF IRTFSAHSYD EPKKFRLYLK RISCAANQEV NIAATVRMRS PNGLGNFHTL  300
AGSNQLHNAA FRSFPPRGVL RRLNTHAGLL IRDLPSPGTI RSGHGQSSVN SGNDQCKLQS  360
FVSGIHNANI LQGLPMSLEL DQIQTNNGVS HIGELQIADS TTVFPVSSSL IDATITGFSG  420
NPLLSVTSNS LMLEASSQQA GNSRDIVPAI GFRNGNTLSD LAPIAPASNR ESNADLQREP  480
IPINCNAREL ITSAPQEWNS PYQSNVTPCS MNSSIPVSGT MVQFGLCLDQ NNSMDSDSIG  540
PSSFIDNSAM EQSIIDKEGY LMLEIWGQGS HIPYNIGLLE DLWELQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17197273364ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016748156.10.0PREDICTED: two-component response regulator ARR12-like
TrEMBLA0A0B0N3S20.0A0A0B0N3S2_GOSAR; Two-component response regulator
STRINGGorai.001G096700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2505534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-109response regulator 12