PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0777
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 447aa    MW: 48815.6 Da    PI: 8.3114
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0777genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.4e-124873126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ++++ C++++rtG C yG++C+F+H+
  Gh_A07G0777 48 PGEPDCSYYLRTGSCGYGSNCRFNHP 73
                 5789*********************8 PP
2zf-CCCH36.86.6e-1292116327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C +f++tGtCkyG++Ck++H++
  Gh_A07G0777  92 QPDCGYFLKTGTCKYGSTCKYHHPK 116
                  789********************96 PP
3zf-CCCH38.32.2e-12139162427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  + C++f+rtG Ck+G  CkF+H++
  Gh_A07G0777 139 KSCPYFMRTGSCKFGVACKFHHPQ 162
                  66********************97 PP
4zf-CCCH39.59.3e-13281306227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++Cr+++ tGtCkyG+ Ck++H++
  Gh_A07G0777 281 DQPECRYYMNTGTCKYGSDCKYHHPK 306
                  689*********************96 PP
5zf-CCCH29.21.6e-09326351126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ++++ C+ +  +G CkyG++C+F H+
  Gh_A07G0777 326 PGQPVCSSYTMYGLCKYGPTCRFDHP 351
                  5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9484775IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-64774IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-94973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-55373IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.71889117IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-689116IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-992116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-693117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-495115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286135163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6137163IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5137162IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-10138162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5140161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.549279307IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-6279306IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10281306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-7282307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-6285306IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5325352IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892325353IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5325351IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6327351IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-4330350IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MPDTRQVQNN VVSNQSADNI EEAILRLKIN DSNQEVGVSK SVSYPDRPGE PDCSYYLRTG  60
SCGYGSNCRF NHPAYDAQGS QYREELPERV GQPDCGYFLK TGTCKYGSTC KYHHPKDRNG  120
AGPVTFNILG LPMRQQDEKS CPYFMRTGSC KFGVACKFHH PQPASPGTGL PVNGPVGSSV  180
LPPTGVPYAG GFPPGSLPRA PFVSGPHLQT QSYMPVVVSP SQNIIPGNGW STYMGNMSPA  240
SSACILGSNY TYNSMNPAEL GSSGQMLLSS APASNFPERP DQPECRYYMN TGTCKYGSDC  300
KYHHPKERIA NSAMSSVGPL GLPSRPGQPV CSSYTMYGLC KYGPTCRFDH PYTGYPYNYA  360
LSYPLSMFDT ALLTYQRMTP SPNLYEAPLP SRVPDWAQNT DLASKKRQNL VTKNSDDSSE  420
QKKLSSAFGH ASLGSTGPER ETVRRNF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.169880.0boll| ovule| root
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744990.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1
RefseqXP_016744999.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1
SwissprotQ94AD91e-127C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A0D2N7M70.0A0A0D2N7M7_GOSRA; Uncharacterized protein
STRINGGorai.001G096900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-129C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]