PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0778
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 487aa    MW: 53585.1 Da    PI: 9.0639
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0778genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96e-124873126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ++++ C++++rtG C yG++C+F+H+
  Gh_A07G0778 48 PGEPDCSYYLRTGSCGYGSNCRFNHP 73
                 5789*********************8 PP
2zf-CCCH36.67.4e-1292116327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C +f++tGtCkyG++Ck++H++
  Gh_A07G0778  92 QPDCGYFLKTGTCKYGSTCKYHHPK 116
                  789********************96 PP
3zf-CCCH38.22.5e-12139162427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  + C++f+rtG Ck+G  CkF+H++
  Gh_A07G0778 139 KSCPYFMRTGSCKFGVACKFHHPQ 162
                  56********************97 PP
4zf-CCCH39.41e-12278303227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++Cr+++ tGtCkyG+ Ck++H++
  Gh_A07G0778 278 DQPECRYYMNTGTCKYGSDCKYHHPK 303
                  689*********************96 PP
5zf-CCCH261.5e-08323348126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ++++ C+ +  +G Ck+G++C+F H+
  Gh_A07G0778 323 PGQPVCSSYTMYGLCKHGPTCRFDHP 348
                  5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9484775IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-64774IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-94973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-55376IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.71889117IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-689116IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-992116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-693117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-495115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286135163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6137163IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5137162IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10138162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-5140161IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-6276303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.549276304IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10278303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-7280305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-6282303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.404322350IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-5322349IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5322348IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5324348IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MPDNRQIQNN VVSNQSADSI EEAILRLKIN DNNQEVGVSK SVSYPDRPGE PDCSYYLRTG  60
SCGYGSNCRF NHPAYDARGG QYREELPERV GQPDCGYFLK TGTCKYGSTC KYHHPKDRNG  120
AGPVTFNTLG LPMRQQDEKS CPYFMRTGSC KFGVACKFHH PQPASAGTGL PVNGPVGSSV  180
FPPTGVPYAG GLPAWSLPRA PFVSGPHLQT QSYMPVVVSP SQNIIPGNGW STYMGPASSA  240
GILGSNYAYN SMNPAESGSS GQMLLSSAPA SNFPERPDQP ECRYYMNTGT CKYGSDCKYH  300
HPKERISISA MSSVGPLGLP SRPGQPVCSS YTMYGLCKHG PTCRFDHPYK GYPYNYALSY  360
PLSMFDTSLL TYQRMTPPPN LSEAPLPSRV PDWARNTDPA SKKHQNLETK SSDDSSEQVV  420
FRHASLGSVR TERKPVRRNF KRRWTGENGS STKVVESGNG NRKWKWITWV REAKVEGWGS  480
CKIAIIT
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744992.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X3
RefseqXP_016745001.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X3
RefseqXP_017623430.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like
SwissprotQ94AD91e-127C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A0D2N7M70.0A0A0D2N7M7_GOSRA; Uncharacterized protein
STRINGGorai.001G096900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-129C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]