PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0882
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 244aa    MW: 27159.5 Da    PI: 6.6702
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0882genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-201877357
                 --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 +R+++tkeq+ +Le+l+ +  r+psa+++++++++l    +++ ++V++WFqN++a++++
  Gh_A07G0882 18 SRWNPTKEQISILESLYLQgLRTPSADQIQQITSRLkaygSIEGKNVFYWFQNHKARQRQ 77
                 6*****************99**************************************97 PP
2Wus_type_Homeobox115.32.9e-371779365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        +RW+Pt+eQi iLe+ly +GlrtP++++iq+it++L++yG ie+kNVfyWFQN+kaR+rqkq
        Gh_A07G0882 17 DSRWNPTKEQISILESLYLQGLRTPSADQIQQITSRLKAYGSIEGKNVFYWFQNHKARQRQKQ 79
                       68***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.8351378IPR001356Homeobox domain
SuperFamilySSF466896.84E-131584IPR009057Homeodomain-like
SMARTSM003894.5E-61582IPR001356Homeobox domain
PfamPF000463.4E-181877IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-81877IPR009057Homeodomain-like
CDDcd000861.09E-51973No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEGGNMDTSG DGGTTGDSRW NPTKEQISIL ESLYLQGLRT PSADQIQQIT SRLKAYGSIE  60
GKNVFYWFQN HKARQRQKQK QQNLAYINRY LYRTTQPVYS PPHGINVVCG PHFLPQVELG  120
IYPQTQCPKV LLPGGDKRRE RPAKMGKPLQ RDYNTMLPDA ENFEGLLNIS NHETLELFPL  180
HPTGLLETKE TLMSPLGSTN SAGISIITPS ISCETTAGID QEGSGTGEQQ FFDFFTCQGS  240
SARD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5279931e-41HQ527993.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GID8O simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016725316.10.0PREDICTED: WUSCHEL-related homeobox 2-like
TrEMBLA0A1U8MER10.0A0A1U8MER1_GOSHI; WUSCHEL-related homeobox 2-like
STRINGGorai.001G108900.11e-163(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69142844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-41WUSCHEL related homeobox 2