PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A07G0954

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GeBP

Protein Properties

Length: 204aa MW: 23353.1 Da PI: 10.9898

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A07G0954	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	54.4	3.6e-17	14	103	4	98
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 +r++se+Dei +L+ li +++ + + ++ + k+++ +++ sq+++KirrL++K +++ ++ ++++hd+ if+lsk+iWg+ Gh_A07G0954 14 SRVFSESDEIQILKCLIRATKSIPPPITTVGTSTINRIIKRLDHRFTVSQITDKIRRLRDKHHNHARN-----RALVRNHHDRRIFKLSKRIWGK 103 69*************997777755555667788999999*******************9999.....778999************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.7E-17	14	102	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MSTTPPSTAP NGRSRVFSES DEIQILKCLI RATKSIPPPI TTVGTSTINR IIKRLDHRFT 60 VSQITDKIRR LRDKHHNHAR NRALVRNHHD RRIFKLSKRI WGKKATPRKK NNKSEDQGAI 120 EVGGDGVEKL DKFPYLVAEF SKVLPENEVW KQKMKRVGEE KLRKMDQEWV MLKVEEAKLV 180 AKKAELIQLQ IMEVMGGNGS ANGV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.4499	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016696866.1	1e-149	PREDICTED: uncharacterized protein LOC107912982
TrEMBL	A0A1U8K2V0	1e-148	A0A1U8K2V0_GOSHI; uncharacterized protein LOC107912982
STRING	Gorai.001G117300.1	1e-145	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17149	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	6e-11	DNA-binding storekeeper protein-related transcriptional regulator