PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0996
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 160aa    MW: 18441 Da    PI: 9.5184
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0996genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-056890123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C +Cgk+F  k + ++H +++
  Gh_A07G0996 68 FMCRKCGKTFAVKGDWRTHEKNC 90
                 89*****************9987 PP
2zf-C2H210.70.001797114522
                  TTTEEESSHHHHHHHHHH CS
      zf-C2H2   5 dCgksFsrksnLkrHirt 22 
                   Cg  F++k +Lk Hir+
  Gh_A07G0996  97 TCGSDFKHKRSLKDHIRS 114
                  799*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.72E-75488No hitNo description
Gene3DG3DSA:3.30.160.603.1E-66488IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.7046888IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MHMWGHGSEY RKGPDSLKGS QPAAMLRLPC YCCAQGCKNN INHPRAKPLK DFRTLQTHYK  60
RKHGAKPFMC RKCGKTFAVK GDWRTHEKNC GKLWYCTCGS DFKHKRSLKD HIRSFGKGHS  120
PHPSLERFED DKECITGSED EFAHWTTTDS LVSDKYSSFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744007.11e-118PREDICTED: zinc finger protein WIP3-like
SwissprotQ9SGD13e-85ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A1U8NYH11e-117A0A1U8NYH1_GOSHI; zinc finger protein WIP3-like
STRINGGorai.001G121700.11e-104(Gossypium raimondii)
STRINGEOY334691e-104(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-87WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]