PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A07G1001

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 468aa MW: 52208 Da PI: 7.662

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A07G1001	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.8	6.2e-10	164	205	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAA++sR+RKka++++Le +L++ ++L Gh_A07G1001 164 AKTLRRLAQNREAAKKSRLRKKAYVQQLESSRMKLTQLEQEL 205 6889*************************9888887776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-6	161	227	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.243	163	207	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-7	164	205	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.56E-6	165	208	No hit	No description
CDD	cd14708	6.87E-21	165	217	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.2E-7	166	209	No hit	No description
PROSITE pattern	PS00036	0	168	183	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.5E-29	246	321	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MANHHIPYAL LHGMNVPTSF INQEGSAFDF GELEEAIALQ GAKANLLTGR TAATLEMFPS 60 WPMRYQQTPG SSKSGGESTD SGSALNTISS KTENQFEPDS PISKKASSSY HQALDQQNLQ 120 QQQQQQEMAS DPSRTGTSLN QSAPIVKLLQ EKKRASTSEK QLDAKTLRRL AQNREAAKKS 180 RLRKKAYVQQ LESSRMKLTQ LEQELQRARS QGLLLGSSGG VVGNISSGAA TCDMEYARWL 240 EDDERHMSEL RTGLHSNLSD TDLRLMVNTY LSHYDENFRL KGMAAKFDVF HLLTGMWTSP 300 AERCFLWMGG FRPSELIKIL ISQLDPLTEQ QLMGICSLQH SSQQAEEALS QGLEQLQQSL 360 IDTVAGGPAI DGMQQMAIAL SKLANLEGFV RQADNLRQQT LHQLPRILTV RQAARCFLVI 420 GEYYARLRAL SSLWASRPRG RLMSDEQPCQ TTTELQMVQP SQSHFSHF

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MANHHIPYAL LHGMNVPTSF INQEGSAFDF GELEEAIALQ GAKANLLTGR TAATLEMFPS  60
WPMRYQQTPG SSKSGGESTD SGSALNTISS KTENQFEPDS PISKKASSSY HQALDQQNLQ  120
QQQQQQEMAS DPSRTGTSLN QSAPIVKLLQ EKKRASTSEK QLDAKTLRRL AQNREAAKKS  180
RLRKKAYVQQ LESSRMKLTQ LEQELQRARS QGLLLGSSGG VVGNISSGAA TCDMEYARWL  240
EDDERHMSEL RTGLHSNLSD TDLRLMVNTY LSHYDENFRL KGMAAKFDVF HLLTGMWTSP  300
AERCFLWMGG FRPSELIKIL ISQLDPLTEQ QLMGICSLQH SSQQAEEALS QGLEQLQQSL  360
IDTVAGGPAI DGMQQMAIAL SKLANLEGFV RQADNLRQQT LHQLPRILTV RQAARCFLVI  420
GEYYARLRAL SSLWASRPRG RLMSDEQPCQ TTTELQMVQP SQSHFSHF

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269\|PubMed:20805327}.
Uniprot	TISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269\|PubMed:20805327}.

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016743996.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1U8NYG3	0.0	A0A1U8NYG3_GOSHI; transcription factor HBP-1b(C38)-like isoform X1
STRING	Gorai.001G122100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5524	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]