PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A07G1057

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 265aa MW: 29506.8 Da PI: 6.386

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A07G1057	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.9	6.2e-40	37	98	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprC+stntkfCyynnyslsqPryfCk+CrryWtkGG lrnvPvGgg+rknk+sss Gh_A07G1057 37 PEEALKCPRCESTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGNLRNVPVGGGCRKNKRSSS 98 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	23	95	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.8E-34	39	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.339	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MDPSRGLHQE MGNPLSESMV VNSKGQQQQE RKARPQPEEA LKCPRCESTN TKFCYYNNYS 60 LSQPRYFCKS CRRYWTKGGN LRNVPVGGGC RKNKRSSSKR TQDHAFTPSA NPLITPHHHP 120 IPPLTYDIDT NDLTLAFATV QEQSTSGQQL GFDDHDGDLS IFGNPSFNGN ALTSSFLGNH 180 SNFQSYCYDN IGMGGATTGL NGETMLPYNN QEMIDSTMAM GQDSENRVLW GLPWQLIAAD 240 NNMVGLGDLD LVRDNWNGLL NTPLM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.16003	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016743833.1	0.0	PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBL	A0A1U8P0G8	0.0	A0A1U8P0G8_GOSHI; dof zinc finger protein DOF2.1-like
STRING	Gorai.001G129500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6960	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	8e-47	Dof family protein