PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1059
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 202aa    MW: 22051.1 Da    PI: 6.2392
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1059genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.42.5e-43401391100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la+++
  Gh_A07G1059  40 PCAACKILRRRCADKCVLAPYFPPTEPTKFTIAHRVFGASNIIKFLQELPESQRADAVSSIVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQ 137
                  7***********************************************************************************************99 PP

       DUF260  99 ee 100
                  +e
  Gh_A07G1059 138 AE 139
                  76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.17239140IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-4340137IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MLKMEYTSEV AAQSPSPKSS NSSSSPPPPP PPPTSVVISP CAACKILRRR CADKCVLAPY  60
FPPTEPTKFT IAHRVFGASN IIKFLQELPE SQRADAVSSI VYEASARIRD PVYGCAGAIC  120
QLQKQVNELQ AQLAKAQAEV VNMQLQQANL VALLCMEVAQ SPQQNPHQPI DDFLSNSPQS  180
YHSNPSFLDD NNLGSSWEPL WT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-42321423113LOB family transfactor Ramosa2.1
5ly0_B4e-42321423113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6158951e-131JX615895.1 Gossypium hirsutum clone NBRI_GE60161 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016743832.11e-145PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9SK088e-74LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A1U8NXZ41e-144A0A1U8NXZ4_GOSHI; LOB domain-containing protein 1-like
STRINGGorai.001G129700.11e-121(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-64LOB domain-containing protein 11