PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1218
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 460aa    MW: 52162.2 Da    PI: 6.4017
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1218genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.22.5e-30510329128
          NAM  29 eleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmh 124
                  ++++ i+evd++k+ePw+Lp +  v+++  ew fF k +k ++  +++ r+t++gyWk+tg d+++++ +++l+g+kktLvfykgr+p+g +tdWvmh
  Gh_A07G1218   5 KATRYIREVDLLKHEPWQLPaMsVVQSTYPEWLFFYKLNKISQ--RKNDRSTNDGYWKSTGADRPITC-GDSLIGTKKTLVFYKGRTPNGLRTDWVMH 99 
                  45567***************5334555555**99999988764..58889******************.999************************** PP

          NAM 125 eyrl 128
                  e+r+
  Gh_A07G1218 100 EFRA 103
                  **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.291124IPR003441NAC domain
SuperFamilySSF1019419.81E-306109IPR003441NAC domain
PfamPF023654.0E-1120102IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MGDHKATRYI REVDLLKHEP WQLPAMSVVQ STYPEWLFFY KLNKISQRKN DRSTNDGYWK  60
STGADRPITC GDSLIGTKKT LVFYKGRTPN GLRTDWVMHE FRATAGSLPP NADNSYVVGY  120
LRDNAAEKNE YLISNVGQQC PRFAASSSPD NAVGATSMES NSMDSDIALL KFMEEEGMFD  180
SDLSPSRGLH SFPSSSAIFN NDQSRIEEER FSLEDFDYQQ SDDLVEGQFV YTIDDEMKFY  240
DALFHNPDER TNAEAEYRDN AWHDQIVHMS DGTCHGHSEG LNQRRMETGI HHDEVLIMDS  300
GVESATVTAY EINCLELVQE ERSVNSRACK SEYEPIFHKS AVLRHPRRVR LQDKSLGKAV  360
SRDKTRESGI RGPAVQPVQD KKSILQANKG PKMDRDRNTK LILNSRSKGS SGSSRKNSFN  420
FVEMSQLSCK ADPPLRFGFH DLTLALVLQP MKPVKSQDNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-201010247139Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.8680.0boll| embryo| leaf| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472500.0KC847250.1 Gossypium hirsutum NAC domain protein NAC73 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016725333.10.0PREDICTED: NAC domain-containing protein 30-like
TrEMBLA0A1U8MIC10.0A0A1U8MIC1_GOSHI; NAC domain-containing protein 30-like
STRINGGorai.001G150000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2219545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-33NAC transcription factor-like 9