PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1220
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 337aa    MW: 38723.1 Da    PI: 9.2622
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1220genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.89.4e-3329133199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l
  Gh_A07G1220  29 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSLSNEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGEsGKDRL 126
                  89****************************88888999*************************************************66577788899 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++r+
  Gh_A07G1220 127 YIDWRRR 133
                  9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-4121140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-3026130IPR015300DNA-binding pseudobarrel domain
CDDcd100176.92E-2728123No hitNo description
SMARTSM010192.7E-2429134IPR003340B3 DNA binding domain
PROSITE profilePS5086315.07229134IPR003340B3 DNA binding domain
PfamPF023624.0E-3029133IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MMDLSLGSCN NIEESNTGSS RCIEKEYMFD KVVTPSDVGK LNRLVIPKQH AEKYFPLDSL  60
SNEKGLLLNF EDRNGKSWRF RYSYWNSSQS YVMTKGWSRF VKEKKLDAGD IVSFQRGVGE  120
SGKDRLYIDW RRRPNAPDPT SFAHFQMQNQ FNFPQSVRWG GGIYSLPQSY EPLHRLNYSI  180
YPYNHHHQRQ QQQQLQQQQH QAITYGNVAQ SQYYLRSSSS GSYHHHHHHQ PQQIGAMQEG  240
RVEPMVIESV PVVQGNKTAA KRLRLFGVNM ECPTPTTDES SSSSPHATIV SDHDSPYFPS  300
SSLQSRLSNN NTPFPLSRMQ AEYSKKGKSS LSFDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-67241363116B3 domain-containing transcription factor NGA1
5os9_B8e-67241363116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6142890.0JX614289.1 Gossypium hirsutum clone NBRI_GE57566 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016725335.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_016725336.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827998e-86NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A1U8MES90.0A0A1U8MES9_GOSHI; B3 domain-containing transcription factor NGA1-like
STRINGGorai.001G150200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-79B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]