PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1555
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 210aa    MW: 22608.4 Da    PI: 4.3224
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1555genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000285879223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 +C  C+k F+++     H+++H
  Gh_A07G1555 58 TCYVCSKNFTSWKAVFGHLKSH 79
                 6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.7645784IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSIDDANETG IDDPKGQGSS SRKRGSTIDV AIQIGSGSGS GSNARKKREM EIPRGEPTCY  60
VCSKNFTSWK AVFGHLKSHQ RETPGALPPP TFTPTEGSPE NNNDDETNPR EQLAPTLLNL  120
ALETMQKMSE DSNMSVVVAG EEASSSGKGR GRGKGRGRGR GRRGLDIDLN QPKTSFLLDL  180
NEPPPPEQDD DDDYDDDDDD GAAADEDDKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151160RGKGRGRGRG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747552.11e-152PREDICTED: transcription regulatory protein SNF2-like
TrEMBLA0A1U8P8L31e-151A0A1U8P8L3_GOSHI; transcription regulatory protein SNF2-like
STRINGGorai.001G198600.11e-115(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.11e-13C2H2 family protein