PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1563
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 260aa    MW: 29163.8 Da    PI: 4.8922
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1563genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox672.6e-21104164257
                  T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  r+R+t+t+ ql++Le+ F + + +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  Gh_A07G1563 104 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 164
                  89*****************99**************************************97 PP
2Wus_type_Homeobox103.41.5e-33103166265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
        Gh_A07G1563 103 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 166
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-1799166IPR009057Homeodomain-like
PROSITE profilePS5007114.803100165IPR001356Homeobox domain
SMARTSM003897.1E-15102169IPR001356Homeobox domain
SuperFamilySSF466894.23E-18103165IPR009057Homeodomain-like
PfamPF000463.9E-19104164IPR001356Homeobox domain
CDDcd000862.66E-14104166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MIMEWEDQEN QNQREILNVN VNNGGVMYVK VMTDEQLETL REQIAVYAAI CEQLVEMHKN  60
LTAQQDLAGL SLSFPLILFY ACGRLGSLYC DPLMTSAGHK ITARQRWTPT PVQLQILERI  120
FDQGTGTPSK QKIKEITSEL SQHGQISETN VYNWFQNRRA RSKRKQLGSS SNNAESELET  180
EVESPNEKKT KPENLLSGQN PAPRAEDLCF QNPEITSELH FLGVMSNPTT FNGGEHLSGK  240
MGMPGSYNIF DQAGDYGMAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157165RRARSKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.131630.0boll| ovule| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016746914.10.0PREDICTED: WUSCHEL-related homeobox 13-like
RefseqXP_017613152.10.0PREDICTED: WUSCHEL-related homeobox 13-like
SwissprotO817881e-104WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A1U8P9I70.0A0A1U8P9I7_GOSHI; WUSCHEL-related homeobox 13-like
STRINGGorai.001G199200.11e-180(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46202851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-104WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]