PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1572
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 410aa    MW: 45223.3 Da    PI: 9.8323
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1572genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP150.79.4e-471012582133
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 
                  a+kkdrhski+T++g RdRRvRls+e+a++fFdLqd+LGfdk+skt+eWLl++++ ai el++ +   +  c   ++s s +  ++ +          
  Gh_A07G1572 101 AVKKDRHSKICTAQGVRDRRVRLSIEIAREFFDLQDMLGFDKASKTVEWLLRKSNNAIRELVKMKRHGN-GCpGGQRSFSLVPDDQYEmvaengalgv 197
                  89**************************************************************33333.5532222222222222223444445667 PP

          TCP  89 .................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                                   +   s+ k+ k+ ++aa +  lakesrakarararertrekm+  
  Gh_A07G1572 198 dggefegtafqsnllelEGVVSKDKKMKNLHKAA-VPLLAKESRAKARARARERTREKMCSG 258
                  8888888999999999866666666666666666.799**********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.7E-44102256IPR005333Transcription factor, TCP
PROSITE profilePS5136935.588103161IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.483237254IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MFFSTSANDY NNINPFLHFP SSSYHPQALP PPPPPPPPLL SHESNGILLN HHHHHHDLVS  60
VSSLLPANPQ LTDTLFNMAL LNKDGVGFGG PPGFGFPVNK AVKKDRHSKI CTAQGVRDRR  120
VRLSIEIARE FFDLQDMLGF DKASKTVEWL LRKSNNAIRE LVKMKRHGNG CPGGQRSFSL  180
VPDDQYEMVA ENGALGVDGG EFEGTAFQSN LLELEGVVSK DKKMKNLHKA AVPLLAKESR  240
AKARARARER TREKMCSGSG SSTSRHEWKI CPDSSPHFLR SLSQLEPTKK SDHSYGHNSS  300
SMASSFKVVA HQVEEPSAAS RDNVIEESLV IRRMLKPSAI LGFQQNLATS KDASCNSSGN  360
NGFPNLSQKW DINGAMAHST LCAVTTNVNL STGTIRKHIY VRPFLPLIFF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747610.10.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A1U8P8Z00.0A0A1U8P8Z0_GOSHI; transcription factor CYCLOIDEA-like
STRINGGorai.001G200400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-29TCP family protein