PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A07G1766

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 452aa MW: 48285.6 Da PI: 4.3766

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A07G1766	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	46	1.2e-14	14	43	26	55
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPk++l+lm+++gL l hvkSHLQkYRl Gh_A07G1766 14 RATPKAVLDLMDIDGLNLFHVKSHLQKYRL 43 8****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.2E-12	14	43	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-9	14	44	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MSCYQRTHIA FAVRATPKAV LDLMDIDGLN LFHVKSHLQK YRLGKYADKD STEGGQTGTF 60 GSSSSAIPLP LCTNQYNRRA KRNLKNTHGE LYLKLQMSIQ DMGAKKLEAE RNVQRCLEEQ 120 RRYLQTALER ACKTLANQYL GDAAAVENAI LYGQASAGLG NFATIPVGPS GFGTSATRVP 180 PFYSEQQNAY PTYNNTLTTP ANLGLQEQPV GYQLQTSFSP APQGNISTSN GYSGSSPHQE 240 TLAAAAAYTD WLVDEDLIQT SFSPATQGNI STSNGYSGSS PHQETSAAAA ADTDWLVDED 300 LIQTSFSPAP QGNISTSNGY SGSSPHQETS AAAAANMDRP VDKDLIQTSF SPATQGNIST 360 SNGYSGSSPH QETSAAAAAD TDWPVDEDLI QTSFSPAPQG NISTSNGYSG SAPHQETSAA 420 AAADIDWPVD EDLIQAFFNW DDNEPMNLDA SL

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MSCYQRTHIA FAVRATPKAV LDLMDIDGLN LFHVKSHLQK YRLGKYADKD STEGGQTGTF  60
GSSSSAIPLP LCTNQYNRRA KRNLKNTHGE LYLKLQMSIQ DMGAKKLEAE RNVQRCLEEQ  120
RRYLQTALER ACKTLANQYL GDAAAVENAI LYGQASAGLG NFATIPVGPS GFGTSATRVP  180
PFYSEQQNAY PTYNNTLTTP ANLGLQEQPV GYQLQTSFSP APQGNISTSN GYSGSSPHQE  240
TLAAAAAYTD WLVDEDLIQT SFSPATQGNI STSNGYSGSS PHQETSAAAA ADTDWLVDED  300
LIQTSFSPAP QGNISTSNGY SGSSPHQETS AAAAANMDRP VDKDLIQTSF SPATQGNIST  360
SNGYSGSSPH QETSAAAAAD TDWPVDEDLI QTSFSPAPQG NISTSNGYSG SAPHQETSAA  420
AAADIDWPVD EDLIQAFFNW DDNEPMNLDA SL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017634379.1	0.0	PREDICTED: uncharacterized protein LOC108476618
TrEMBL	A0A0D2NCU6	0.0	A0A0D2NCU6_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8P8J7	0.0	A0A1U8P8J7_GOSHI; DNA-directed RNA polymerase II subunit RPB1-like
STRING	Gorai.001G225500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21949	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	2e-17	G2-like family protein