PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A07G1781

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 212aa MW: 24167.5 Da PI: 9.1289

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A07G1781	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88	1.4e-27	41	130	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY eYA+++GF vr+ + ++s +g++ r++ C+k+g++ ++k + +e+++r++ r gCka++ vk+ek+gkw+vt++e+eHnH+l+ Gh_A07G1781 41 KFYIEYARRIGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHKGTLGQEKKPRPSAREGCKATILVKMEKTGKWVVTRFEKEHNHPLM 130 6***************************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.9E-26	41	130	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MSIEGGKADS SVEEKTAEPE GSEILEPYVG MEFESEDDAK KFYIEYARRI GFVVRIMQRR 60 RSGIDGRTLA RRLGCNKQGF SPNHKGTLGQ EKKPRPSARE GCKATILVKM EKTGKWVVTR 120 FEKEHNHPLM ITTNGFNTTG DKDKKIEELT MELAHQEQLC SAYREKLFAF INNVEKQTEE 180 LSSKIEVIVD NVRKLEAQRQ RFTHRSAGSL GI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.22381	0.0	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017624503.1	1e-154	PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
Swissprot	Q9SZL8	7e-24	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0B0MT75	1e-153	A0A0B0MT75_GOSAR; Far1-related sequence 5-like protein
STRING	Gorai.001G227800.1	1e-150	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	5e-78	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]