PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1811
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 403aa    MW: 45423.1 Da    PI: 4.478
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1811genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.83e-3851363128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                  +GfrFhPtdeel+ + L      ++ +l +vi++v di+++ePw+L   +k++++++ wyf  +   ky+++kr nr+t++gyWk tg+ +++++  +
  Gh_A07G1811   5 KGFRFHPTDEELIEYLLLVTFCVDRDSLVQVIDQVpDICQWEPWQLAesSKLQTGDRLWYFIYTPTYKYRNSKRINRTTREGYWKPTGNARKIIDPkT 102
                  7************999999988888899899***************7444899999**************************************9878 PP

          NAM  97 gelvglkktLvfykg..rapkgektdWvmheyrl 128
                  g+++g+kktLv+ykg  ++++  kt Wvmhey+l
  Gh_A07G1811 103 GKVIGTKKTLVYYKGqcNDKDKIKTCWVMHEYEL 136
                  899**********8844666778*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.33158IPR003441NAC domain
SuperFamilySSF1019413.92E-384156IPR003441NAC domain
PfamPF023654.1E-205136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MNTVKGFRFH PTDEELIEYL LLVTFCVDRD SLVQVIDQVP DICQWEPWQL AESSKLQTGD  60
RLWYFIYTPT YKYRNSKRIN RTTREGYWKP TGNARKIIDP KTGKVIGTKK TLVYYKGQCN  120
DKDKIKTCWV MHEYELVAAP NSTDTDRKTF NLCKLKKRVD ISCTDAGQSS QHKDCDDVVH  180
NQSGIESYAG EISSQHNIAN DDVVSNLSSH DLDDAISKGN LHERSKECNE PEGNSGVQKL  240
NSIIEKDDKS CSSVLTNGDE TITVERSDQN NVVVAIEGLG IPSSFEYLGD EVLIPAEFFY  300
NEGLSFDELL EVPQATNNSN WIQDQSITNP DDVEFLNSSF VDNDEAYLLE ENRPYPSAAD  360
NEVLGAVGSS DSMEKPSKRP RLSHDDHVET TEARAGGSIS YQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-23113613140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.251450.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613837.10.0PREDICTED: protein NTM1-like 9
TrEMBLA0A2P5XCF90.0A0A2P5XCF9_GOSBA; Uncharacterized protein
STRINGGorai.001G231400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2220645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.21e-34TCV-interacting protein