PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1843
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 326aa    MW: 35256.7 Da    PI: 6.8434
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1843genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.5e-16117163455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Gh_A07G1843 117 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 163
                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-21111182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.42E-17116167No hitNo description
PfamPF000101.6E-13117163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-21117176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MPCNTEAASG EDNNNACANM SFAAVAHTQS AAVSVGASKD NIATCEATVT SSPGGSSASA  60
SAEPTAQKTG PAEDRKRKGR EPDDAECHSE DAEFESPETK KQSRGSSSTK RSRAAEVHNL  120
SERRRRDRIN EKMRALQELI PRCNKSDKAS MLDEAIEYLK SLQLQVQMMS MGCGMLPMMF  180
PQHYMPTMGM GIGMGMVMDM GLSRPMMPFH NVMAGSGLPT PAASAHLDPR FPVPAFHMSP  240
QVPVPDPSRI QPNNQSDAML NPLGMQNPNQ PRIPSFADPY QQYMGLHQMQ LHPPQCQATA  300
QPSSSKPSNS KGAENLENHP SGDMAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121126ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.211640.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434175.10.0PREDICTED: transcription factor PIF1-like
RefseqXP_012434181.10.0PREDICTED: transcription factor PIF1-like
RefseqXP_012434189.10.0PREDICTED: transcription factor PIF1-like
RefseqXP_012434197.10.0PREDICTED: transcription factor PIF1-like
TrEMBLA0A0B0P1J20.0A0A0B0P1J2_GOSAR; Transcription factor PIF1-like protein
STRINGGorai.001G234900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71082643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-45phytochrome interacting factor 3-like 5