PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1929
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 140aa    MW: 15653.3 Da    PI: 5.0718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1929genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-181769256
          AP2  2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr+++ +g+++AeIrd +  +g   r +lg+f+tae+Aa+a+++a+ +++g+
  Gh_A07G1929 17 RYRGVRRRP-WGKFAAEIRDSTRlGG--PRLWLGTFDTAEDAARAYDRAAFAMRGA 69
                 59*******.**********433354..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.9E-341782IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-301778IPR001471AP2/ERF domain
PfamPF008472.5E-131768IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-221778IPR016177DNA-binding domain
CDDcd000185.08E-181777No hitNo description
PROSITE profilePS5103223.4331776IPR001471AP2/ERF domain
PRINTSPR003672.8E-111829IPR001471AP2/ERF domain
PRINTSPR003672.8E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MEGDKRKKAG EGDSSIRYRG VRRRPWGKFA AEIRDSTRLG GPRLWLGTFD TAEDAARAYD  60
RAAFAMRGAS AILNFPDEHM ASPTTNPPPS SSMASSSSSS AIENAERKRE HDTQVLELEY  120
LDDELLEQLL DFDNKDTKKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-31101257114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6156451e-133JX615645.1 Gossypium hirsutum clone NBRI_GE59730 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747859.19e-99PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1U8PC672e-97A0A1U8PC67_GOSHI; ethylene-responsive transcription factor ERF098-like
STRINGGorai.001G252400.12e-64(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2489734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-17ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]