PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G2076
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 224aa    MW: 26119.5 Da    PI: 6.1672
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G2076genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.3e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
      Gh_A07G2076 14 RGPWTNEEDHKLMNFIFNNGIPCWRHVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding56.28e-1867110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T+ E++ +++++ qlG++ W++Ia++++ gRt++++k++w++
      Gh_A07G2076  67 RGCFTESEEDEIIRLHSQLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.969961IPR017930Myb domain
SuperFamilySSF466898.17E-2811108IPR009057Homeodomain-like
SMARTSM007171.7E-81363IPR001005SANT/Myb domain
PfamPF002492.5E-121461IPR001005SANT/Myb domain
CDDcd001678.17E-61661No hitNo description
PROSITE profilePS5129426.67662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2565117IPR009057Homeodomain-like
SMARTSM007171.5E-1666114IPR001005SANT/Myb domain
PfamPF002494.6E-1667110IPR001005SANT/Myb domain
CDDcd001671.73E-1170110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGRKPCCDKV GLKRGPWTNE EDHKLMNFIF NNGIPCWRHV PKLAGLLRCG KSCRLRWINY  60
LRPGLKRGCF TESEEDEIIR LHSQLGNRWS KIASHFPGRT DNEIKNHWNT RIRKKLKLLG  120
LDPVTHKPVE NGEKNKQEET KSEDVIKDDE IQTTLDGTET DDLLNNYEIL CGSLDSSFSK  180
EESNNPSMAT QEEDCLKQWV DCVDSFFSWD NFIHLEEQIP FPWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. Strongest expression in the stem. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016712792.11e-165PREDICTED: myb-related protein 315-like
SwissprotP813944e-72MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A1U8LDV11e-163A0A1U8LDV1_GOSHI; myb-related protein 315-like
STRINGGorai.001G268000.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-81myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]