PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A07G2130

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 127aa MW: 14434.3 Da PI: 9.6592

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A07G2130	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	38	60	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++ F ++ L H++ H Gh_A07G2130 38 FPCLYCPRKFYTSQALGGHQNAH 60 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.18E-6	36	65	No hit	No description
PROSITE profile	PS50157	10.575	38	65	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	40	60	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009909	Biological Process	regulation of flower development
GO:0010582	Biological Process	floral meristem determinacy
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MADPSMYNFF NQPEPSSASK PIKKHPQTAS PSAPPRLFPC LYCPRKFYTS QALGGHQNAH 60 RRERAASRRK FPGGDHDQIR GAQQYNLQQQ LNPFPSFKIE PPMDYPGAPY LDQCLQPHYF 120 PSTGFIP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016725402.1	1e-89	PREDICTED: zinc finger protein 1-like
Refseq	XP_017635748.1	1e-89	PREDICTED: zinc finger protein KNUCKLES
TrEMBL	A0A1U8MEW9	2e-88	A0A1U8MEW9_GOSHI; zinc finger protein 1-like
STRING	Gorai.001G274200.1	2e-61	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6966	20	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	1e-17	C2H2 family protein