PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A07G2132

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 245aa MW: 27937 Da PI: 10.0417

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A07G2132	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	112.7	3.9e-35	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk.k 96 +p G+rF+Ptdeelvv+yLk+k+ + +l++ +vi+e+d+++++Pw+Lp v +++ yfFs+r +++++k+++r ++ sgyWk gk+k++l++ + Gh_A07G2132 14 MPIGYRFRPTDEELVVHYLKRKALNLPLPA-SVIPEFDVFQTDPWSLPGDV---KEKRYFFSNRYGNESNNKKRKRvVAGSGYWKPIGKEKTILASgT 107 699*************************.99***********554...4578***999999999997888**********9967 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+++ L+f + + + +k +W++h++rl Gh_A07G2132 108 NQVVGMRQALIFCERKPWTDTKPRWLLHQFRL 139 788******9999999********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-42	10	164	IPR003441	NAC domain
PROSITE profile	PS51005	41.67	14	165	IPR003441	NAC domain
Pfam	PF02365	1.2E-19	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MEGQRFVVNG GIKMPIGYRF RPTDEELVVH YLKRKALNLP LPASVIPEFD VFQTDPWSLP 60 GDVKEKRYFF SNRYGNESNN KKRKRVVAGS GYWKPIGKEK TILASGTNQV VGMRQALIFC 120 ERKPWTDTKP RWLLHQFRLV GSADETLMTK REWHGDWVVF KVIQRKRNAK KHGVICSNSQ 180 TTRAAAYMPS CIDFTGEDSS VFGPPQPTSP SSSEFTEVSP NGLLDQEESS AAVITTFLHY 240 CMRKQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-29	12	171	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-29	12	171	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-29	12	171	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-29	12	171	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-29	12	171	18	174	NAC domain-containing protein 19
3swm_B	6e-29	12	171	18	174	NAC domain-containing protein 19
3swm_C	6e-29	12	171	18	174	NAC domain-containing protein 19
3swm_D	6e-29	12	171	18	174	NAC domain-containing protein 19
3swp_A	6e-29	12	171	18	174	NAC domain-containing protein 19
3swp_B	6e-29	12	171	18	174	NAC domain-containing protein 19
3swp_C	6e-29	12	171	18	174	NAC domain-containing protein 19
3swp_D	6e-29	12	171	18	174	NAC domain-containing protein 19
4dul_A	5e-29	12	171	15	171	NAC domain-containing protein 19
4dul_B	5e-29	12	171	15	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.23953	0.0	boll

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589385	1e-41	JX589385.1 Gossypium hirsutum clone NBRI_GE24075 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017636795.1	0.0	PREDICTED: NAC domain-containing protein 83-like
TrEMBL	A0A0B0PH13	0.0	A0A0B0PH13_GOSAR; NAC domain-containing 68
STRING	Gorai.001G274500.1	1e-167	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7874	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	3e-47	NAC domain containing protein 83