PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G2175
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SAP
Protein Properties Length: 451aa    MW: 49608.5 Da    PI: 6.8806
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G2175genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP698.95.7e-21314511455
          SAP   1 mssssssssseseegseggeggdass....gesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrsdllwq 94 
                  mssssssss++s+++se g+g ++++    g++egps +r+r  ne+wp Pf+e l ++vaidasrs+Grlaaa a+anvfqvcstw+avsrsd lw+
  Gh_A07G2175   1 MSSSSSSSSASSSSSSEDGNGNGHGArrgaGDFEGPSLTRRRGNNEIWPGPFVEDLVVKVAIDASRSIGRLAAAGAIANVFQVCSTWQAVSRSDPLWH 98 
                  788888777777777776666665556666******************************************************************** PP

          SAP  95 rltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvstflpqhrd 192
                  rlt+ iW rt++++ tW+eey+yrh+t++nfr +r+ +vtl+fdp+ vd    +d l+Crcl+ls+++la+GfadG+vrlfdl+trlhv tf+pqh+d
  Gh_A07G2175  99 RLTSVIWGRTHRMHTTWHEEYVYRHQTSQNFRLGRSVHVTLHFDPTGVDI---PDGLTCRCLTLSETHLACGFADGTVRLFDLATRLHVATFHPQHGD 193
                  **********************************************8888...689****************************************** PP

          SAP 193 rlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPe 290
                  r+GrfsravsGi+i+d r++fatldGdi+va+i+g  + +arra++G++v+dG lvdf+G+grWwvGlyaGvpGra hiWd++teelv+v  +ltd e
  Gh_A07G2175 194 RFGRFSRAVSGIIITDPRIIFATLDGDIYVAIIEG--QHQARRAHIGNIVDDGSLVDFTGCGRWWVGLYAGVPGRAIHIWDGNTEELVYVNTTLTDRE 289
                  **********************************9..78*********************************************************** PP

          SAP 291 avmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasneayvvvdsrGvatvrrvenleevcrfrvrgaqrg 388
                  +++GWhmltelte++Grvrvt++e+avaCts + vv+dlrn+   l+++e++rG+iv s+d++nea+++vd+rG a+vrr+++lee+crf+ r  +++
  Gh_A07G2175 290 SLRGWHMLTELTEAIGRVRVTSEESAVACTSNKYVVLDLRNPAFPLHDRESARGFIVNSFDTNNEAFIIVDNRGRAIVRRADTLEELCRFNTR--HGN 385
                  ********************************************************************************************9..89* PP

          SAP 389 vlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsssdgtihlldfgaq 455
                  ++gC+n+gyal++a+gv+rvW ie+ + ylys+ e +g v a+  ddrhva++ss++tihl+dfgaq
  Gh_A07G2175 386 LMGCMNLGYALLCAAGVIRVWGIEHGQ-YLYSFGENIGAVSAMAGDDRHVAAASSNSTIHLWDFGAQ 451
                  ************************966.*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813837.85E-677125IPR001810F-box domain
Gene3DG3DSA:1.20.1280.507.5E-677142No hitNo description
SMARTSM0032013132177IPR001680WD40 repeat
SuperFamilySSF509782.93E-15150286IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.0E-13154448IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.93E-15341447IPR017986WD40-repeat-containing domain
PROSITE profilePS502948.94401451IPR017986WD40-repeat-containing domain
SMARTSM003201.2410447IPR001680WD40 repeat
PROSITE patternPS006780434448IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MSSSSSSSSA SSSSSSEDGN GNGHGARRGA GDFEGPSLTR RRGNNEIWPG PFVEDLVVKV  60
AIDASRSIGR LAAAGAIANV FQVCSTWQAV SRSDPLWHRL TSVIWGRTHR MHTTWHEEYV  120
YRHQTSQNFR LGRSVHVTLH FDPTGVDIPD GLTCRCLTLS ETHLACGFAD GTVRLFDLAT  180
RLHVATFHPQ HGDRFGRFSR AVSGIIITDP RIIFATLDGD IYVAIIEGQH QARRAHIGNI  240
VDDGSLVDFT GCGRWWVGLY AGVPGRAIHI WDGNTEELVY VNTTLTDRES LRGWHMLTEL  300
TEAIGRVRVT SEESAVACTS NKYVVLDLRN PAFPLHDRES ARGFIVNSFD TNNEAFIIVD  360
NRGRAIVRRA DTLEELCRFN TRHGNLMGCM NLGYALLCAA GVIRVWGIEH GQYLYSFGEN  420
IGAVSAMAGD DRHVAAASSN STIHLWDFGA Q
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in inflorescence and floral meristems, young floral organ primordia, and later in ovule primordia.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6194528e-94JX619452.1 Gossypium hirsutum clone NBRI_GE65288 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648680.10.0PREDICTED: transcriptional regulator STERILE APETALA-like
SwissprotQ9FKH11e-172SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A1U8P9F50.0A0A1U8P9F5_GOSHI; transcriptional regulator STERILE APETALA-like
STRINGGorai.001G191800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110182634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-173SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]