PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A07G2280

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 445aa MW: 49869.2 Da PI: 5.3427

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A07G2280	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.7	2.6e-10	109	131	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++++tG Ck+G +CkF+H+ Gh_A07G2280 109 EDCAYYMKTGLCKFGFNCKFNHP 131 89********************9 PP
2	zf-CCCH	30.5	6.2e-10	152	175	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++++rtG Ck+G C+++H++ Gh_A07G2280 152 QECKYYLRTGGCKFGKACRYNHSK 175 58********************95 PP
3	zf-CCCH	39.2	1.1e-12	196	220	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ Gh_A07G2280 196 GEKECPYYMRNGSCKYGANCRFNHP 220 6789********************9 PP
4	zf-CCCH	26.9	8.2e-09	332	358	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++Ck++H++ Gh_A07G2280 332 PGQPECSYFLKTGDCKFKSNCKYHHPK 358 5789*********************96 PP
5	zf-CCCH	37	5.6e-12	379	403	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G+Ck+G+ CkF H+ Gh_A07G2280 379 DQSICSYYSRYGICKFGPACKFDHS 403 6789********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	3.27E-6	104	133	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.2E-4	105	132	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.235	105	133	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.5E-8	109	131	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.3E-4	111	130	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.925	148	176	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.0E-4	148	175	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.24E-6	150	176	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-7	152	175	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-4	154	175	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.201	194	222	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.7E-6	194	221	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.3E-10	196	220	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.3E-6	197	223	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-5	200	219	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.333	331	359	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.8E-4	331	358	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-6	333	358	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.49E-5	336	360	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.58E-6	375	403	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.6E-4	377	404	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.53	377	405	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-9	379	403	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-4	381	404	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MSQSEETTHT DSALLSLGLN STDPTPIPLD ESPSDLNHSV KETDHHENNL EQQLNNLDLK 60 EEEEEDKVDV ETQNDVEEEE EDIIENENDD DVKKDEERRT NYPVRPEAED CAYYMKTGLC 120 KFGFNCKFNH PVRRKNQAVK EKDESTEKTN QQECKYYLRT GGCKFGKACR YNHSKQNSSV 180 SPILELNFLG LPIRKGEKEC PYYMRNGSCK YGANCRFNHP DPKLAGACEP PSGYGNGGSV 240 SLQAASQVNM ASWAAPMTLN DSAAYFPIMF SPTQGVPPPN PEWNGYQTTL YPPLERGLHP 300 TPAYVMSNPS TETTAYTHHQ PQMVVDDFPE RPGQPECSYF LKTGDCKFKS NCKYHHPKNR 360 VPKPTPCALS DKGLPLRPDQ SICSYYSRYG ICKFGPACKF DHSIQATPPT VSGLDQPRPF 420 SHSTATEQAG IARSNRADTA VQQSV

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MSQSEETTHT DSALLSLGLN STDPTPIPLD ESPSDLNHSV KETDHHENNL EQQLNNLDLK  60
EEEEEDKVDV ETQNDVEEEE EDIIENENDD DVKKDEERRT NYPVRPEAED CAYYMKTGLC  120
KFGFNCKFNH PVRRKNQAVK EKDESTEKTN QQECKYYLRT GGCKFGKACR YNHSKQNSSV  180
SPILELNFLG LPIRKGEKEC PYYMRNGSCK YGANCRFNHP DPKLAGACEP PSGYGNGGSV  240
SLQAASQVNM ASWAAPMTLN DSAAYFPIMF SPTQGVPPPN PEWNGYQTTL YPPLERGLHP  300
TPAYVMSNPS TETTAYTHHQ PQMVVDDFPE RPGQPECSYF LKTGDCKFKS NCKYHHPKNR  360
VPKPTPCALS DKGLPLRPDQ SICSYYSRYG ICKFGPACKF DHSIQATPPT VSGLDQPRPF  420
SHSTATEQAG IARSNRADTA VQQSV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016744400.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X1
Swissprot	Q9STM4	1e-135	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A1U8NZV5	0.0	A0A1U8NZV5_GOSHI; zinc finger CCCH domain-containing protein 67-like isoform X1
STRING	Gorai.001G061800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4176	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-132	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]