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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_A08G0005 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | GRAS | ||||||||
| Protein Properties | Length: 601aa MW: 68572.9 Da PI: 7.1071 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 363.7 | 2.6e-111 | 228 | 597 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
+lL++cA+ v+ +d++ a+++L+ +++++s++gd +qRla+yf++AL +rla+++ ly+ l +++ts +++l+a+ +++ ++P+ k+s++ aN+
Gh_A08G0005 228 SLLTQCAQSVAVNDQRTANEMLKLIRQHSSESGDGTQRLAHYFANALTTRLAGMGAPLYAHLLSNRTS---AADALKAYGVYVLACPFKKMSNFYANK 322
79*********************************************************999888887...8************************** PP
GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
I+e +e+++++HiiDf+i +G+QWp+L+q L+++++gp +lRiTg++ p++g +e++eetg+rL++++e+++v fe nv +ak++e+++leeL++
Gh_A08G0005 323 RIMELAEKATTLHIIDFGICYGFQWPCLIQLLSAQAGGPSKLRITGIEFPQPGfrPAERVEETGRRLKRYCERFNVLFECNV-IAKKWETIQLEELKI 419
****************************************************9****************************9.7************** PP
GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
++E+++Vn++++l++l+d++v+ +s+r++vLkl++s++P+++++ + +n++ F+ rf eal ++sa fd +ea+++r++ +r++ E+e+ gr+i
Gh_A08G0005 420 TKDEVVVVNCMYRLKNLPDDTVAPTSARETVLKLIRSINPELFIHGVTNGTYNAPFFVSRFREALFHFSAQFDIFEATVARDDPQRMMFEKEIHGRDI 517
************************************************************************************************** PP
GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+n++aceg+er+er et+++W+ r + GFk vpl+++ +k++ +++ + + + v+ + +++++gWk+r ++++S+W+
Gh_A08G0005 518 MNLIACEGTERVERPETYKQWQVRTLRTGFKRVPLNQELVKKVMDMIQSSYHRDFVVDVDGHWMLQGWKGRIIYALSCWK 597
***************************************************999*************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 62.431 | 200 | 577 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 9.1E-109 | 228 | 597 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 601 aa Download sequence Send to blast |
MPVYANHNLD NGSKESPIDS SSSSPSSGVS SDSPFPNEML KYINQMLMEE DLEEKTCMLQ 60 DCLALQAAER SFYEVLCHNY PIPAGLNHYY PDDDCNSSKG EFNSFYPQTS LIDSLERTSL 120 FPDLRRGTVE RLGEGSKSPS VDVDKVRGRK NYQREDVEEG RIIKQSALSL EDSEQTEMFD 180 DVLLCKGENE DSPKCSLNGN SAQHRQIKRS NGRRKKNEKK SEAVDLWSLL TQCAQSVAVN 240 DQRTANEMLK LIRQHSSESG DGTQRLAHYF ANALTTRLAG MGAPLYAHLL SNRTSAADAL 300 KAYGVYVLAC PFKKMSNFYA NKRIMELAEK ATTLHIIDFG ICYGFQWPCL IQLLSAQAGG 360 PSKLRITGIE FPQPGFRPAE RVEETGRRLK RYCERFNVLF ECNVIAKKWE TIQLEELKIT 420 KDEVVVVNCM YRLKNLPDDT VAPTSARETV LKLIRSINPE LFIHGVTNGT YNAPFFVSRF 480 REALFHFSAQ FDIFEATVAR DDPQRMMFEK EIHGRDIMNL IACEGTERVE RPETYKQWQV 540 RTLRTGFKRV PLNQELVKKV MDMIQSSYHR DFVVDVDGHW MLQGWKGRII YALSCWKPVK 600 N |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5hyz_A | 3e-50 | 230 | 597 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016743824.1 | 0.0 | PREDICTED: scarecrow-like protein 30 | ||||
| Swissprot | P0C883 | 0.0 | SCL33_ARATH; Scarecrow-like protein 33 | ||||
| TrEMBL | A0A1U8P0T9 | 0.0 | A0A1U8P0T9_GOSHI; scarecrow-like protein 30 | ||||
| STRING | Gorai.004G005200.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM3646 | 25 | 61 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G29060.1 | 0.0 | GRAS family protein | ||||




