PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0005
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 601aa    MW: 68572.9 Da    PI: 7.1071
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0005genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.72.6e-1112285973374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL++cA+ v+ +d++ a+++L+ +++++s++gd +qRla+yf++AL +rla+++  ly+ l +++ts    +++l+a+ +++ ++P+ k+s++ aN+
  Gh_A08G0005 228 SLLTQCAQSVAVNDQRTANEMLKLIRQHSSESGDGTQRLAHYFANALTTRLAGMGAPLYAHLLSNRTS---AADALKAYGVYVLACPFKKMSNFYANK 322
                  79*********************************************************999888887...8************************** PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                   I+e +e+++++HiiDf+i +G+QWp+L+q L+++++gp +lRiTg++ p++g   +e++eetg+rL++++e+++v fe nv +ak++e+++leeL++
  Gh_A08G0005 323 RIMELAEKATTLHIIDFGICYGFQWPCLIQLLSAQAGGPSKLRITGIEFPQPGfrPAERVEETGRRLKRYCERFNVLFECNV-IAKKWETIQLEELKI 419
                  ****************************************************9****************************9.7************** PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                   ++E+++Vn++++l++l+d++v+ +s+r++vLkl++s++P+++++   +  +n++ F+ rf eal ++sa fd +ea+++r++ +r++ E+e+ gr+i
  Gh_A08G0005 420 TKDEVVVVNCMYRLKNLPDDTVAPTSARETVLKLIRSINPELFIHGVTNGTYNAPFFVSRFREALFHFSAQFDIFEATVARDDPQRMMFEKEIHGRDI 517
                  ************************************************************************************************** PP

         GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +n++aceg+er+er et+++W+ r  + GFk vpl+++ +k++  +++  + + + v+ + +++++gWk+r ++++S+W+
  Gh_A08G0005 518 MNLIACEGTERVERPETYKQWQVRTLRTGFKRVPLNQELVKKVMDMIQSSYHRDFVVDVDGHWMLQGWKGRIIYALSCWK 597
                  ***************************************************999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.431200577IPR005202Transcription factor GRAS
PfamPF035149.1E-109228597IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MPVYANHNLD NGSKESPIDS SSSSPSSGVS SDSPFPNEML KYINQMLMEE DLEEKTCMLQ  60
DCLALQAAER SFYEVLCHNY PIPAGLNHYY PDDDCNSSKG EFNSFYPQTS LIDSLERTSL  120
FPDLRRGTVE RLGEGSKSPS VDVDKVRGRK NYQREDVEEG RIIKQSALSL EDSEQTEMFD  180
DVLLCKGENE DSPKCSLNGN SAQHRQIKRS NGRRKKNEKK SEAVDLWSLL TQCAQSVAVN  240
DQRTANEMLK LIRQHSSESG DGTQRLAHYF ANALTTRLAG MGAPLYAHLL SNRTSAADAL  300
KAYGVYVLAC PFKKMSNFYA NKRIMELAEK ATTLHIIDFG ICYGFQWPCL IQLLSAQAGG  360
PSKLRITGIE FPQPGFRPAE RVEETGRRLK RYCERFNVLF ECNVIAKKWE TIQLEELKIT  420
KDEVVVVNCM YRLKNLPDDT VAPTSARETV LKLIRSINPE LFIHGVTNGT YNAPFFVSRF  480
REALFHFSAQ FDIFEATVAR DDPQRMMFEK EIHGRDIMNL IACEGTERVE RPETYKQWQV  540
RTLRTGFKRV PLNQELVKKV MDMIQSSYHR DFVVDVDGHW MLQGWKGRII YALSCWKPVK  600
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-502305978375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016743824.10.0PREDICTED: scarecrow-like protein 30
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLA0A1U8P0T90.0A0A1U8P0T9_GOSHI; scarecrow-like protein 30
STRINGGorai.004G005200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein