PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A08G0080

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 261aa MW: 29371.5 Da PI: 7.7996

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A08G0080	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	128.4	2.1e-40	27	88	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++sss Gh_A08G0080 27 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNRRSSS 88 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.7E-34	29	85	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-26	30	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.581	31	85	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	33	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MPNPTLGNMM VSTKGNEQQE RKPRPQPEQA LKCPRCDSTN TKFCYYNNYS LSQPRYFCKS 60 CRRYWTKGGT LRNVPVGGGC RKNRRSSSSS STSSKRSQDQ LFMSSNTNLP PVDTSELSLA 120 IARLQKQANV HLGFDENELP VLGNPNSFGL LGNQNHFQGF YNYGFENSGG ETMMLPYNND 180 EEIISDATIR TTSNGMVAAM KQEVVSDGNK SDENQNQWGL QWQLNGDHGN NYYNMVDFDS 240 VRENWSGLSS TWHGLLNSPL M

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393984	1e-125	GQ393984.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0949 SSR marker CGR6147 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016739260.1	0.0	PREDICTED: dof zinc finger protein DOF2.1
TrEMBL	A0A1U8NK85	0.0	A0A1U8NK85_GOSHI; dof zinc finger protein DOF2.1
STRING	Gorai.004G012700.1	1e-178	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6960	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	2e-39	Dof family protein