PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0150
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 417aa    MW: 47059.7 Da    PI: 6.8591
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0150genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.91.5e-30210264155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r+rW peLHe F++av+qLGG++ AtPk+il+lm+v+gL+++hvkSHLQkYRl
  Gh_A08G0150 210 KQRIRWIPELHELFLNAVDQLGGPDCATPKNILKLMNVEGLSIYHVKSHLQKYRL 264
                  79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.63207267IPR017930Myb domain
SuperFamilySSF466893.05E-16208265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27208265IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-24210265IPR006447Myb domain, plants
PfamPF002498.8E-8214263IPR001005SANT/Myb domain
PfamPF143791.8E-12305348IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MQTSYPGPFS VHKFLNSDPI ALYSAYENSP SPYFMPEHQQ QEALAPISQP SMSQPHPYRF  60
NTGLNQSWLP NSKTGNHDGN RRYNQKVAVC DPSLCGEKDD FMAFTHVPAS SPCGSPQGSM  120
SQGSMYAKQS LTLKEKLQLQ YLTKELEIDV SESSPLGLDQ EIHEETPQVS SDQGIHQLGF  180
KRNHVTSVVN MDGYIHSMNQ QYTDAMAAHK QRIRWIPELH ELFLNAVDQL GGPDCATPKN  240
ILKLMNVEGL SIYHVKSHLQ KYRLAKGVSE LKNVDKGSSR FEEERATLIE SDDHQSDGNI  300
EREVDVVETL KMQIEVQKLL HEQLKVQKEL QLQIQQQGQL LKKLMDERRH KSGSANKKMF  360
PSENPFLFSS ETASFFQKSG SAKSITDCSS STHSPKHKAS ETTESEHCQK RHRGESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-20210266258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-20210266258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-20210266258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-20210266258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-20210266258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-20210266258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-20210266258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-20210266258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016712539.10.0PREDICTED: uncharacterized protein LOC107926252
TrEMBLA0A1U8LH890.0A0A1U8LH89_GOSHI; uncharacterized protein LOC107926252
STRINGGorai.004G023100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2122345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.22e-30G2-like family protein