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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_A08G0197 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
C2H2 |
| Protein Properties |
Length: 161aa MW: 18031.9 Da PI: 9.1433 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A08G0197 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.8 | 0.00018 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C + F ++ L H++ H
Gh_A08G0197 44 FSCNYCQRKFFSSQALGGHQNAH 66
89*****************9988 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 161 aa
Download sequence Send
to blast |
MNYQPNTSLR LSLPNDQLNL DLALEPSSSS SSSNSPTTTE PRVFSCNYCQ RKFFSSQALG 60
GHQNAHKLER TLAKKSRELS SSVQIHGSSL SGFSHPQRMQ SHVATFEQHH RAGRFAGEIG 120
YGRRDINYGP RDGMMGSWSS KGYRPDDVQD EFSHLDLSLR L
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Highly expressed at in the abscission zone (AZ) of petals, stamens, sepals and siliques. Expressed at lower levels in stamens, carpels, cotyledons, major veins of rosette leaves, trichomes of inflorescence leaves and stems. {ECO:0000269|PubMed:18192438}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX618542 | 2e-45 | JX618542.1 Gossypium hirsutum clone NBRI_GE64060 microsatellite sequence. |
