PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0212
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 537aa    MW: 58629.2 Da    PI: 6.765
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0212genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.83.9e-32216273260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Gh_A08G0212 216 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQIMEIIYKGTHDHPK 273
                  8****************************************.***************85 PP
2WRKY106.51.4e-33376434159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Gh_A08G0212 376 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHN 434
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.974210274IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-26212274IPR003657WRKY domain
SuperFamilySSF1182905.62E-25213274IPR003657WRKY domain
SMARTSM007741.5E-33215273IPR003657WRKY domain
PfamPF031061.5E-24216272IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-37361436IPR003657WRKY domain
SuperFamilySSF1182902.09E-29368436IPR003657WRKY domain
PROSITE profilePS5081138.434371436IPR003657WRKY domain
SMARTSM007744.0E-39376435IPR003657WRKY domain
PfamPF031063.8E-26377433IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MEEQILAPSS SLATGATQHV LSGSAGSGGA RYKLVAPSKL PISRSACLTT PPGLSPSSFL  60
ESPVLLSDVK VEPSPTTGSL FKPQAVHARV ASSTYPESVA CSNAFDERNT SCFEFKPHPI  120
SNMASADLNH QRSEQSLHIQ GQNGTVLFDS SASVKSEMAG LSNEMSLSMP VHTATSVVSV  180
PPEVDVEELS QMGSPNIGIQ CGQSDHRVGG QSVSFDDGYN WRKYGQKHVK GSEFPRSYYK  240
CTHPNCEVKK LFERSHDGQI MEIIYKGTHD HPKPQPSCRY SSSNIVSGQE ERSDKLSSLN  300
GRDSIYGQTV HSVEPNSSAD QLRVTANDDN VDDVDDDDPL SKRSRKMDVA IDIIPVVRPI  360
REPRVVVQTL SEVDILDDGY RWRKYGQKVV RGNPNPRSYY KCTNAGCPVR KHVERASHDP  420
KAVITTYEGK HNHNVPTAKT NTHDTTISVN GPSRIRSEDN GAISLDLGVG ISSILENSSN  480
EHQELHSELV QCHPQTGGSS FKFVQPHPMA AYYSVLNSSD MDLEKIQTKV PASKLHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36215436877Probable WRKY transcription factor 4
2lex_A2e-36215436877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697630.0KF669763.1 Gossypium hirsutum WRKY transcription factor 22 (WRKY22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624240.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0D2P6600.0A0A0D2P660_GOSRA; Uncharacterized protein
STRINGGorai.004G033200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-161WRKY family protein