PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0389
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 368aa    MW: 39960 Da    PI: 8.5923
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0389genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.41.6e-105275427
                 ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                   C +++rtG+C yG++C+++H++
  Gh_A08G0389 52 TDCVYYMRTGFCGYGNSCRYNHPR 75
                 68********************96 PP
2zf-CCCH41.62.1e-1394120127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C+f+++tGtCk+G++CkF+H++
  Gh_A08G0389  94 PGEPVCQFYLKTGTCKFGASCKFHHPK 120
                  5789*********************96 PP
3zf-CCCH37.15.4e-12141166227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C+++++tG+Ck+G +CkF+H++
  Gh_A08G0389 141 GEKECSYYLKTGQCKFGITCKFHHPQ 166
                  7899********************97 PP
4zf-CCCH36.96e-12289315127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C++++rtG Ck+G++C+++H++
  Gh_A08G0389 289 PGEPECQYYLRTGDCKFGSSCRYHHPR 315
                  5799*********************96 PP
5zf-CCCH34.92.5e-11336360226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +  +C f++++G+Ck+G++CkF H+
  Gh_A08G0389 336 GVQPCAFYLQNGHCKFGSTCKFDHP 360
                  6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.8E-64875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1694876IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-65076IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-75275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-45475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.61593121IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-893120IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-1195120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-697121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-698119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821139167IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5139166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6141167IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9141166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4145165IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-6288315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817288316IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9290315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6292317IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-5294315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.084334362IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-6334361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6336365IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-9336360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5338360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MELYGRNPTR NGSQSGYQPE WSPAGPETGL EESMWQLSVR GVESYPERLG VTDCVYYMRT  60
GFCGYGNSCR YNHPRNRAAV EAAVRATGEY PERPGEPVCQ FYLKTGTCKF GASCKFHHPK  120
DGGGSFSHVS LNMHGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPSGT SMSASAPQFY  180
QPVQYGGAST NVRVARPPPL PGSYVQGGAY GPVLFSPGVV PIPGWSHYLA PVSPVLSPGA  240
QPAAGATSLY GLTHLSSSTP SLAGPYSSLP SSTGLSSSNQ KEHTFPERPG EPECQYYLRT  300
GDCKFGSSCR YHHPRDRVVP QTNCVLSPMG LPLRPGVQPC AFYLQNGHCK FGSTCKFDHP  360
VGTMRFSP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.19431e-175boll| leaf| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021280725.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0D2RTX50.0A0A0D2RTX5_GOSRA; Uncharacterized protein
TrEMBLA0A2P5RYS50.0A0A2P5RYS5_GOSBA; Uncharacterized protein
STRINGGorai.004G053200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein