PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0538
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 122aa    MW: 14021.8 Da    PI: 7.6794
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0538genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.74e-1575122353
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                  y+GVr++  +g+++AeIrd + ng  +r++lg++ t+++Aa a+++a+ k+
  Gh_A08G0538  75 YRGVRRRL-SGKYAAEIRDLKRNG--ARIWLGTYETPDGAALAYVRAAFKM 122
                  9****888.8*********54454..**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-1974122IPR001471AP2/ERF domain
SMARTSM003807.7E-1474122IPR001471AP2/ERF domain
CDDcd000181.45E-1874122No hitNo description
PROSITE profilePS5103217.46474122IPR001471AP2/ERF domain
PfamPF008475.4E-1075122IPR001471AP2/ERF domain
PRINTSPR003674.8E-77586IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-1475122IPR016177DNA-binding domain
PRINTSPR003674.8E-798114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MILIQFQDRE NPRKNELHDD AINVDQWINF DQLFDATEET DAVNNASFPS FEVSFQMETT  60
AAVPKPHAPP KKFNYRGVRR RLSGKYAAEI RDLKRNGARI WLGTYETPDG AALAYVRAAF  120
KM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1674122250ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-1671122253ATERF1
3gcc_A2e-1671122253ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473780.19e-69PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLA0A2P5Y2C17e-83A0A2P5Y2C1_GOSBA; Uncharacterized protein
STRINGGorai.004G070600.14e-68(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.15e-21ethylene-responsive element binding factor 13