PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0848
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 418aa    MW: 47087.5 Da    PI: 5.1105
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0848genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box292.2e-091661342
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                 +r C+ + +k+++++C  ++ +lC+ C ++ H+       H++v+l
  Gh_A08G0848 16 ARACDGCLQKRARWYCAADDAFLCQGCDTSVHSAnqlasrHERVSL 61
                 578*****************************66889999998875 PP
2CCT68.22.2e-23362405144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Gh_A08G0848 362 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 405
                  9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.7E-111461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6231461IPR000315B-box-type zinc finger
PfamPF006435.0E-81661IPR000315B-box-type zinc finger
CDDcd000216.11E-91761No hitNo description
PROSITE profilePS5101716.083362404IPR010402CCT domain
PfamPF062035.5E-18362404IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MITDKKAANV MGGKTARACD GCLQKRARWY CAADDAFLCQ GCDTSVHSAN QLASRHERVS  60
LQTASSKFNA SMHGTIDQDA PPAWHQGFTR KARTPRQNKP MLGQQKGEGT VLALNPIDPL  120
VPEVGSEEGS VDENEEQLLC RVPVFDPFSE ELFNMVTSDC DEVAMPNEDG NLVVDGYEHE  180
RTCELDDGLH GFLPSDLDLA KFAADVESLL GVRLDEDSRD IKNFESLVCT DENGSELCHE  240
RKRMKVEEEE VEGITACFCE SAFEVTRASL NWSFDYDSPT ITEEEEQEIP VAKTQRNKLL  300
RLNYESVITA WASQGSPWTR GTRPELNPDD FMGSYPKDEH HQNGGIGGIN RQARANNTDG  360
EREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRTSFVGL GTAFPYTN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372388RRTRLFSKKIRYEVRKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5845342e-91JX584534.1 Gossypium hirsutum clone NBRI_GE17865 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016700153.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
RefseqXP_016708984.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A1U8KGS30.0A0A1U8KGS3_GOSHI; zinc finger protein CONSTANS-LIKE 16-like
STRINGGorai.004G113000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16600813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-91B-box type zinc finger protein with CCT domain