PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0907
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 234aa    MW: 26987.1 Da    PI: 7.6556
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0907genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.11.3e-173083356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 k+ +f++eq++ Le+ Fe++ ++  +++ + A++lgL+ rqV +WFqN+Ra++k
  Gh_A08G0907 30 KKKRFSDEQIRLLESIFESETKLEPRKKMQPASELGLQPRQVAIWFQNKRARWK 83
                 5677*************************************************9 PP
2HD-ZIP_I/II117.76.6e-3830117289
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  kk+r+s+eq++lLE+ Fe+e+kLep++K++ a+eLglqprqva+WFqn+RAR+k+kq E+dy++Lk++yd+l+++ e+L+ke+++L  
  Gh_A08G0907  30 KKKRFSDEQIRLLESIFESETKLEPRKKMQPASELGLQPRQVAIWFQNKRARWKSKQKEQDYNTLKANYDNLESRFESLKKEKQSLIL 117
                  9***********************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-172187IPR009057Homeodomain-like
PROSITE profilePS5007116.5522585IPR001356Homeobox domain
SMARTSM003894.6E-142789IPR001356Homeobox domain
PfamPF000468.2E-153083IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-183292IPR009057Homeodomain-like
CDDcd000862.75E-123386No hitNo description
PfamPF021836.2E-1185116IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
METEYHPAVD EAIAGQAPQI PRNKKMNKLK KKRFSDEQIR LLESIFESET KLEPRKKMQP  60
ASELGLQPRQ VAIWFQNKRA RWKSKQKEQD YNTLKANYDN LESRFESLKK EKQSLILLIQ  120
KSSQLLEEPR KGRKGLDGSS TDGGGGGGGS KYGENKWETE AEGQPSFQHK ECLGLQTENE  180
RDDVKQTGQG GEEFLIMDEY RNDSPASPDK FYGLHSTGMF DHSYTNFQWL NFWT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016735985.11e-174PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A1U8NAG11e-172A0A1U8NAG1_GOSHI; homeobox-leucine zipper protein ATHB-12-like
STRINGGorai.004G123100.11e-132(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1899938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.25e-38homeobox 7