PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1229
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 276aa    MW: 30915.4 Da    PI: 5.4785
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1229genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014163185123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+k+F++   L  H  +H
  Gh_A08G1229 163 YRCETCNKVFNSYQALGGHRASH 185
                  9***********99999998887 PP
2zf-C2H213.30.00025212234123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kCp C k+Fs+   L  H r+H
  Gh_A08G1229 212 HKCPVCFKVFSSGQALGGHKRSH 234
                  79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.2E-12163187IPR007087Zinc finger, C2H2
SMARTSM003550.014163185IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.02E-8163234No hitNo description
PROSITE profilePS5015710.658163190IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
PfamPF139123.2E-11211234IPR007087Zinc finger, C2H2
SMARTSM003550.056212234IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764212239IPR007087Zinc finger, C2H2
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDKVKCKQLC LKSFANGETQ LRSNMLNLPT PPNVEQESAS PSYSSSSSEE KGQFYGLREN  60
PKRSIRFVDP EFVDADSVVV QSKESETESS KYPTQKRSKR TCAEPEPATS LSDTTTEEDV  120
AFCLMMLSRD QRKSKVAQHD DIDDEEEETD EFAEFNRTTR GKYRCETCNK VFNSYQALGG  180
HRASHKKIKA YETELAPENV GTTCSMTEKK THKCPVCFKV FSSGQALGGH KRSHVAAATT  240
QTYVKSSNKL VVNFIDLNLP APVDDDDDDD GFLMLK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6162711e-130JX616271.1 Gossypium hirsutum clone NBRI_GE60799 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016723981.10.0PREDICTED: zinc finger protein ZAT9-like isoform X1
TrEMBLA0A1U8MAV90.0A0A1U8MAV9_GOSHI; zinc finger protein ZAT9-like isoform X1
STRINGGorai.004G164000.11e-162(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.15e-46C2H2-like zinc finger protein